BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0127700 Os08g0127700|AK121348
         (536 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0127700  Conserved hypothetical protein                      900   0.0  
AK110365                                                          463   e-130

>Os08g0127700 Conserved hypothetical protein
          Length = 536

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/536 (82%), Positives = 443/536 (82%)

Query: 1   MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60
           MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP
Sbjct: 1   MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61  SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW 120
           SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW
Sbjct: 61  SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW 120

Query: 121 TNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARXXXXXXXXXXXXX 180
           TNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEAR             
Sbjct: 121 TNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARKKYLKEQQLKKLE 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXAKVDESAQMDFAKVEKRVRXXXXXXXXXVRNLRI 240
                                     AKVDESAQMDFAKVEKRVR         VRNLRI
Sbjct: 181 EKDGEEGDENVASEEEDEEDGLKIDEAKVDESAQMDFAKVEKRVRTTGGGSTGTVRNLRI 240

Query: 241 REDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNI 300
           REDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNI
Sbjct: 241 REDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNI 300

Query: 301 HAWEAFDKGQDIHMQAAPSQAELXXXXXXXXXXXXXXXXXXXXMEKYGNAASEEPIPREL 360
           HAWEAFDKGQDIHMQAAPSQAEL                    MEKYGNAASEEPIPREL
Sbjct: 301 HAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKSENKDKIMEKYGNAASEEPIPREL 360

Query: 361 LLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQT 420
           LLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQT
Sbjct: 361 LLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQT 420

Query: 421 IRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVRHEEKRLATWGTDVPNDIVXXXX 480
           IRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVRHEEKRLATWGTDVPNDIV    
Sbjct: 421 IRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVRHEEKRLATWGTDVPNDIVLDKK 480

Query: 481 XXXXXXXXXGAXXXXXXXXXXXXYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDFLH 536
                    GA            YNVKWNDEVTAEDMEAYRMKRIHHDDPMRDFLH
Sbjct: 481 LLDEALKKEGARRKEEMDERKRKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDFLH 536



>AK110365 
          Length = 571

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/558 (46%), Positives = 320/558 (57%), Gaps = 26/558 (4%)

Query: 1   MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60
           + +   SFK+ ++ R+Q ELEEARKAGLAPAE+DE+GKEINPHIPQYMS+APWYLN+DKP
Sbjct: 3   LLSKMASFKTSDEMRRQKELEEARKAGLAPAELDEEGKEINPHIPQYMSTAPWYLNSDKP 62

Query: 61  SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW 120
           +LKHQRNWK     +  WYDRGAK+FQ  KYRKGACENCG+M+H    C+ERPR+ GA+W
Sbjct: 63  TLKHQRNWKQQLEDSGQWYDRGAKVFQVTKYRKGACENCGSMSHKVADCLERPRAKGARW 122

Query: 121 TNINIAPDEKVESFEL-DYDGKRDRWNGYDPSTYTRVIADYEARE----EARXXXXXXXX 175
           TN +IA D+KV+   L  YD KRDR+NGY    Y  V+  YE  E    E +        
Sbjct: 123 TNKHIAADDKVQQIHLTSYDSKRDRYNGYSTDEYAAVVEKYEQVEALWQELKAKEQVEEL 182

Query: 176 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVDESAQMDFAKVEKRVRXXXXXXXXXV 235
                                          AK+ +     F +V+KRVR         V
Sbjct: 183 YKQGKAAEAAAAAAAAAAAGDGADAAGAADDAKIADDEDAAFGEVKKRVRTTAGGSTGSV 242

Query: 236 RNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEF 295
           RNLRIREDTAKYLLNLD NS++YDPK+RSMREDP P+   N+K + GDN  R SG+   +
Sbjct: 243 RNLRIREDTAKYLLNLDTNSSHYDPKSRSMREDPNPNRPANEKTFFGDNFVRTSGEYQTW 302

Query: 296 KQLNIHAWEAFDKGQDIHMQAAPSQAELXXXXXXXXXXXXXXXXXXXXMEKYGNAASEEP 355
           + LN+H+ +AFDKG ++H+QA PS AE+                    + KYGN A E+P
Sbjct: 303 QALNLHSMQAFDKGTEVHVQALPSLAEVMYQQFKSKKEKLQTKSKEEVLAKYGNTA-EKP 361

Query: 356 IPRELLLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINNHTTVWGSWWKDHQWGYK 415
               LLLGQ+E  +EYDRTGR+IKGQ+V   +S+YEEDV INNHT VWGSWW D  WGY 
Sbjct: 362 PDEALLLGQTEAYVEYDRTGRVIKGQEVK-KRSRYEEDVLINNHTAVWGSWWGDGAWGYA 420

Query: 416 CCKQTIRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPV----------RHEEKRLA 465
           CCK T +NSYCTG AG  AA  SA  M  N+  K A   E            +H EK  A
Sbjct: 421 CCKSTAKNSYCTGKAGERAAAESAAQMVKNLEAKAARAAEEAEARAKSTLSNKHLEKGQA 480

Query: 466 TWGTDVPN-------DIVXXXXXXXXXXXXXG--AXXXXXXXXXXXXYNVKWNDEVTAED 516
            WG D P        D V                A             +   ++ +TAE+
Sbjct: 481 HWGDDAPAGDEELDPDKVKAALQKLEKAEREAEQAGQDERKRKFNSLADGGGDEAMTAEE 540

Query: 517 MEAYRMKRIHHDDPMRDF 534
           MEAYR+K+   +DP   F
Sbjct: 541 MEAYRLKKQRMEDPAAAF 558



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,751,449
Number of extensions: 604537
Number of successful extensions: 1250
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 4
Length of query: 536
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 430
Effective length of database: 11,501,117
Effective search space: 4945480310
Effective search space used: 4945480310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)