BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0121800 Os08g0121800|AK110693
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0121800  Ribosomal protein S21 family protein                180   5e-46
Os08g0121400                                                       89   1e-18

>Os08g0121800 Ribosomal protein S21 family protein
          Length = 160

 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/160 (62%), Positives = 100/160 (62%)

Query: 1   MCXXXXXXXXXGIISPPTPSLLWANTRATFVSFPRRXXXXXXXXXXXXXXXXXXXXXNPK 60
           MC         GIISPPTPSLLWANTRATFVSFPRR                     NPK
Sbjct: 1   MCAAAAAAATAGIISPPTPSLLWANTRATFVSFPRRSPPTTSLLSASSAPAPAPPSANPK 60

Query: 61  YHNAKVNAGDEEVDGEELLQRFRREVARAGVMEEIXXXXXXXXXXXXXXXXXXXXXXXXX 120
           YHNAKVNAGDEEVDGEELLQRFRREVARAGVMEEI                         
Sbjct: 61  YHNAKVNAGDEEVDGEELLQRFRREVARAGVMEEIRWRRRHEDARDKRKRKARSAARRFR 120

Query: 121 XXXXXGPYPFGDEQEPKEGIMEDDKHDNWELPGGELPSYR 160
                GPYPFGDEQEPKEGIMEDDKHDNWELPGGELPSYR
Sbjct: 121 RRHFKGPYPFGDEQEPKEGIMEDDKHDNWELPGGELPSYR 160



>Os08g0121400 
          Length = 135

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 60/84 (71%)

Query: 12 GIISPPTPSLLWANTRATFVSFPRRXXXXXXXXXXXXXXXXXXXXXNPKYHNAKVNAGDE 71
          GIISPPTP LL ANTRATFVSFPRR                     NPKYHNAKV+ GDE
Sbjct: 11 GIISPPTPRLLRANTRATFVSFPRRSPPTTSLLSASSALAPAPPSANPKYHNAKVDEGDE 70

Query: 72 EVDGEELLQRFRREVARAGVMEEI 95
          EVDGEELLQRFRREVARAGVMEEI
Sbjct: 71 EVDGEELLQRFRREVARAGVMEEI 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,372,335
Number of extensions: 110620
Number of successful extensions: 221
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)