BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0101500 Os08g0101500|AK106547
         (477 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0101500  Conserved hypothetical protein                      122   8e-28

>Os08g0101500 Conserved hypothetical protein
          Length = 477

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 87/208 (41%)

Query: 270 HLSGGVEARVHQGRAAADPXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXSHEPGGVL 329
           HLSGGVEARVHQGRAAADP               R                 SHEPGGVL
Sbjct: 270 HLSGGVEARVHQGRAAADPAVGAQLGGGGVQADARPVPGAEGVADVGVGDDGSHEPGGVL 329

Query: 330 VRRHAVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAACXXXXXXXXXXXX 389
           VRRHAVLP                                   LHAAC            
Sbjct: 330 VRRHAVLPRRGRAGGAVQVRGEERRVRGGAGRAEAGAGPAAGRLHAACPRPVPRRSSRRA 389

Query: 390 XXXXXXXXXXXXXXXXXXXXXXXDAAVHGGVAGGXXXXXXXXXXXXXXXXXXXQGLRAQG 449
                                  DAAVHGGVAGG                   QGLRAQG
Sbjct: 390 AAVRRSGARGGGEGHVHEGGGVRDAAVHGGVAGGLQRRARLPLRDARPRPSLPQGLRAQG 449

Query: 450 THRLISNGFVIPIPFHYHLKKRQPNIHK 477
           THRLISNGFVIPIPFHYHLKKRQPNIHK
Sbjct: 450 THRLISNGFVIPIPFHYHLKKRQPNIHK 477



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,520,953
Number of extensions: 74346
Number of successful extensions: 66
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 372
Effective length of database: 11,553,331
Effective search space: 4297839132
Effective search space used: 4297839132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)