Os08g0101500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0101500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.54 | 0.565 | 7.35 | 3.37 | 0.579 | -1.74 | 0.118 | 1.81 | -0.0404 | 14.1 | 20.79 | 2601 | -- | -- |
| 146.24 | 0.563 | 7.37 | 3.18 | 0.752 | -1.8 | 0.049 | -- | 0.0461 | 14.1 | 18.47 | 7685 | -- | -- |
| 144.58 | 0.56 | 7.35 | 3.37 | 0.576 | -1.74 | -- | 1.83 | -0.0403 | 14.2 | 20.92 | 2609 | -- | -- |
| 146.24 | 0.563 | 7.37 | 3.17 | 0.751 | -1.8 | -- | -- | 0.0424 | 14.1 | 18.5 | 7693 | -- | -- |
| 163.66 | 0.596 | 7.35 | 3.41 | -- | -1.87 | -- | 1.97 | -0.0272 | -- | 21.31 | 2575 | -- | -- |
| 229.44 | 0.71 | 7.5 | 2.17 | 0.802 | -- | 0.202 | -- | -0.566 | 13.8 | -- | -- | -- | -- |
| 229.6 | 0.71 | 7.5 | 2.17 | 0.803 | -- | -- | -- | -0.565 | 13.9 | -- | -- | -- | -- |
| 166.23 | 0.6 | 7.42 | 2.88 | -- | -1.84 | -- | -- | -0.155 | -- | 20.15 | 2568 | -- | -- |
| 319.41 | 0.832 | 7.49 | -- | 0.676 | -0.985 | -- | -- | -0.48 | 14.4 | 29.01 | 9051 | -- | -- |
| 268.56 | 0.766 | 7.51 | 2.14 | -- | -- | -- | -- | -0.583 | -- | -- | -- | -- | -- |
| 354.21 | 0.88 | 7.56 | -- | 0.763 | -- | -- | -- | -0.807 | 13.8 | -- | -- | -- | -- |
| 343.72 | 0.863 | 7.5 | -- | -- | -0.975 | -- | -- | -0.55 | -- | 28.82 | 8314 | -- | -- |
| 389.52 | 0.921 | 7.56 | -- | -- | -- | -- | -- | -0.821 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 3 | 126.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 4 | 126.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 12 | 129.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 16 | 129.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 18 | 129.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 22 | 129.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 36 | 132.35 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 68 | 133.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 75 | 134.27 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 76 | 134.32 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 81 | 134.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 85 | 134.61 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 102 | 134.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 106 | 135.02 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 107 | 135.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 109 | 135.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 119 | 135.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 19 |
| 122 | 135.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 132 | 135.76 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 133 | 135.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 134 | 135.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 158 | 136.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 180 | 136.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 182 | 136.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 185 | 136.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 13 |
| 219 | 136.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 232 | 136.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 238 | 136.63 | radiation | 1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 313 | 137.25 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 345 | 137.80 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 355 | 137.96 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 368 | 138.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 374 | 138.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 383 | 138.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 408 | 138.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 418 | 138.37 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 433 | 138.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 505 | 139.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 519 | 139.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 554 | 139.68 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 562 | 139.86 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 581 | 139.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 586 | 140.08 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 617 | 140.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 621 | 140.65 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 624 | 140.68 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 627 | 140.72 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 639 | 140.93 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 641 | 140.94 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 667 | 141.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 682 | 141.30 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 720 | 141.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 755 | 141.86 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 758 | 141.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 759 | 141.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 778 | 142.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 784 | 142.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 787 | 142.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 794 | 142.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 810 | 142.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 18 |
| 819 | 142.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 869 | 142.42 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 940 | 142.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 988 | 142.85 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 999 | 142.86 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 14 |