BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0693400 Os07g0693400|J033041E24
         (89 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0693400  Armadillo-like helical domain containing protein    185   6e-48
Os03g0292900  Conserved hypothetical protein                       87   3e-18

>Os07g0693400 Armadillo-like helical domain containing protein
          Length = 89

 Score =  185 bits (470), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  GIPASGVCLPCSYALCSHFWILFAFLDSESFQFLSRYFIYTAKDLEEWSENPESFHHEQN 60
          GIPASGVCLPCSYALCSHFWILFAFLDSESFQFLSRYFIYTAKDLEEWSENPESFHHEQN
Sbjct: 1  GIPASGVCLPCSYALCSHFWILFAFLDSESFQFLSRYFIYTAKDLEEWSENPESFHHEQN 60

Query: 61 LVQWTEKQRPCAEALFIVIFENYREVCTS 89
          LVQWTEKQRPCAEALFIVIFENYREVCTS
Sbjct: 61 LVQWTEKQRPCAEALFIVIFENYREVCTS 89



>Os03g0292900 Conserved hypothetical protein
          Length = 191

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%)

Query: 33  FLSRYFIYTAKDLEEWSENPESFHHEQNLVQWTEKQRPCAEALFIVIFENY 83
            + R+FIYTA D+ EW  NPESFHHEQNL+Q TEK+RPCAEALFI++F+NY
Sbjct: 85  LIRRHFIYTATDMNEWHSNPESFHHEQNLLQCTEKRRPCAEALFIILFDNY 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,290,746
Number of extensions: 111101
Number of successful extensions: 301
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 17,035,801
Length adjustment: 59
Effective length of query: 30
Effective length of database: 13,955,175
Effective search space: 418655250
Effective search space used: 418655250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)