BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0670800 Os07g0670800|J065007M02
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0670800  Similar to 60S ribosomal protein L19-3              263   2e-71

>Os07g0670800 Similar to 60S ribosomal protein L19-3
          Length = 140

 Score =  263 bits (673), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/140 (93%), Positives = 131/140 (93%)

Query: 1   RSRVTCSTTRGDLMESIHKCKLRKLGRELFPTSLKPSLPRAWQAKKGRFPGGRRGWLRKD 60
           RSRVTCSTTRGDLMESIHKCKLRKLGRELFPTSLKPSLPRAWQAKKGRFPGGRRGWLRKD
Sbjct: 1   RSRVTCSTTRGDLMESIHKCKLRKLGRELFPTSLKPSLPRAWQAKKGRFPGGRRGWLRKD 60

Query: 61  LISGCLSSIMLRSAAIIWTGNXXXXXXXXXMYLETAFFSFTAISSLFAYYLPVSIVLGYQ 120
           LISGCLSSIMLRSAAIIWTGN         MYLETAFFSFTAISSLFAYYLPVSIVLGYQ
Sbjct: 61  LISGCLSSIMLRSAAIIWTGNLHQLLQLQHMYLETAFFSFTAISSLFAYYLPVSIVLGYQ 120

Query: 121 KKWRSQELLRSFSLLVSWYH 140
           KKWRSQELLRSFSLLVSWYH
Sbjct: 121 KKWRSQELLRSFSLLVSWYH 140



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,558,784
Number of extensions: 159485
Number of successful extensions: 480
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)