Os07g0670800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L19-3.
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Os07g0670800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L19-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.32 | 0.736 | 6.25 | 1.36 | 1.52 | -4.51 | 0.153 | -2.25 | 1.33 | 13.3 | 23.8 | 3868 | -- | -- |
| 249.19 | 0.735 | 6.32 | 1.09 | 1.53 | -4.05 | -0.0144 | -- | 1.27 | 13.2 | 24.76 | 3818 | -- | -- |
| 245.32 | 0.729 | 6.25 | 1.34 | 1.51 | -4.57 | -- | -2.35 | 1.33 | 13.3 | 23.63 | 3871 | -- | -- |
| 249.14 | 0.735 | 6.33 | 1.06 | 1.53 | -4.06 | -- | -- | 1.26 | 13.2 | 24.7 | 3833 | -- | -- |
| 359.83 | 0.883 | 6.28 | 1.13 | -- | -4.57 | -- | -2.07 | 1.31 | -- | 23.5 | 4624 | -- | -- |
| 515.31 | 1.06 | 6.09 | 3.03 | 1.28 | -- | 0.167 | -- | 2.31 | 13.3 | -- | -- | -- | -- |
| 515.43 | 1.06 | 6.09 | 3.04 | 1.28 | -- | -- | -- | 2.31 | 13.3 | -- | -- | -- | -- |
| 364.96 | 0.89 | 6.34 | 0.9 | -- | -4.06 | -- | -- | 1.26 | -- | 24.34 | 4630 | -- | -- |
| 258.66 | 0.749 | 6.38 | -- | 1.45 | -4.96 | -- | -- | 1.03 | 13.3 | 24 | 5277 | -- | -- |
| 617 | 1.16 | 6.11 | 2.99 | -- | -- | -- | -- | 2.29 | -- | -- | -- | -- | -- |
| 758.92 | 1.29 | 6.17 | -- | 1.23 | -- | -- | -- | 1.97 | 13.2 | -- | -- | -- | -- |
| 375.19 | 0.902 | 6.39 | -- | -- | -4.95 | -- | -- | 1.03 | -- | 23.74 | 6006 | -- | -- |
| 852.74 | 1.36 | 6.19 | -- | -- | -- | -- | -- | 1.95 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 247.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 3 | 247.07 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 9 | 247.34 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 31 | 247.84 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 18 |
| 104 | 248.71 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 167 | 249.59 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 209 | 250.39 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 211 | 250.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 228 | 250.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 244 | 250.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 250 | 251.16 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 310 | 252.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 7 |
| 323 | 252.87 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 328 | 252.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 436 | 254.47 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 479 | 255.19 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 483 | 255.26 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 496 | 255.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 513 | 255.88 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 518 | 255.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 528 | 256.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 529 | 256.16 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 593 | 257.24 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 606 | 257.59 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 608 | 257.63 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 615 | 257.73 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 647 | 258.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 676 | 258.60 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 691 | 258.81 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 794 | 259.76 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 800 | 259.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 802 | 259.83 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 13 | NA |
| 804 | 259.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 891 | 260.30 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |