BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0659500 Os07g0659500|AK073537
         (1325 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0659500  Non-SMC condensin subunit, XCAP-D2/Cnd1 family...  2571   0.0  

>Os07g0659500 Non-SMC condensin subunit, XCAP-D2/Cnd1 family protein
          Length = 1325

 Score = 2571 bits (6665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1258/1315 (95%), Positives = 1258/1315 (95%)

Query: 1    MAPPFVFPSTLRDLERXXXXXXXXEPALRPQNPVAVGALRAADLEEFVKGTSFDLSDKEL 60
            MAPPFVFPSTLRDLER        EPALRPQNPVAVGALRAADLEEFVKGTSFDLSDKEL
Sbjct: 1    MAPPFVFPSTLRDLERDGDGGGDDEPALRPQNPVAVGALRAADLEEFVKGTSFDLSDKEL 60

Query: 61   FCIEEQDVFDRVYSLVRDFTCLPPALKFNLVETLRSNLSVLLPNIDSLSRASMSSPSDGI 120
            FCIEEQDVFDRVYSLVRDFTCLPPALKFNLVETLRSNLSVLLPNIDSLSRASMSSPSDGI
Sbjct: 61   FCIEEQDVFDRVYSLVRDFTCLPPALKFNLVETLRSNLSVLLPNIDSLSRASMSSPSDGI 120

Query: 121  PVTDRIASHRNALKIYSFFLLSIVVAEESGADSCNGPKVAVHGRKKNAVYAWNWEAQRGR 180
            PVTDRIASHRNALKIYSFFLLSIVVAEESGADSCNGPKVAVHGRKKNAVYAWNWEAQRGR
Sbjct: 121  PVTDRIASHRNALKIYSFFLLSIVVAEESGADSCNGPKVAVHGRKKNAVYAWNWEAQRGR 180

Query: 181  IMNLIANSLEVDLSLLFGPGGADEQYLSFVSKCTFVLCENQNVLKDEEIRNGLCRIIGAI 240
            IMNLIANSLEVDLSLLFGPGGADEQYLSFVSKCTFVLCENQNVLKDEEIRNGLCRIIGAI
Sbjct: 181  IMNLIANSLEVDLSLLFGPGGADEQYLSFVSKCTFVLCENQNVLKDEEIRNGLCRIIGAI 240

Query: 241  ATKHQRVSQTSASVLHLIHKFDFTXXXXXXXXXXXXKRFGDGSLAILLIREIGRTDPKDY 300
            ATKHQRVSQTSASVLHLIHKFDFT            KRFGDGSLAILLIREIGRTDPKDY
Sbjct: 241  ATKHQRVSQTSASVLHLIHKFDFTVVLLAESVAAAEKRFGDGSLAILLIREIGRTDPKDY 300

Query: 301  VRDSAGADNAGRFLVELADRLPKLMSTNIGVLIPHFGGESYKIRNSLVGVLGKLAAKAFK 360
            VRDSAGADNAGRFLVELADRLPKLMSTNIGVLIPHFGGESYKIRNSLVGVLGKLAAKAFK
Sbjct: 301  VRDSAGADNAGRFLVELADRLPKLMSTNIGVLIPHFGGESYKIRNSLVGVLGKLAAKAFK 360

Query: 361  DVEGDSDAHSLRLRSKHAMLEILLERCRDVSAYTRSRVLQVWAELCEENAISIGLWNEVA 420
            DVEGDSDAHSLRLRSKHAMLEILLERCRDVSAYTRSRVLQVWAELCEENAISIGLWNEVA
Sbjct: 361  DVEGDSDAHSLRLRSKHAMLEILLERCRDVSAYTRSRVLQVWAELCEENAISIGLWNEVA 420

Query: 421  SVASGRLEDKSAIVRKSALQLLITMLQHNPFGPQLRTATFEATLERYKEKLQGMEPPSPE 480
            SVASGRLEDKSAIVRKSALQLLITMLQHNPFGPQLRTATFEATLERYKEKLQGMEPPSPE
Sbjct: 421  SVASGRLEDKSAIVRKSALQLLITMLQHNPFGPQLRTATFEATLERYKEKLQGMEPPSPE 480

Query: 481  KDELLNDSSLGEVIAGQDESVSDSCLPSSQDPKDQDPTIVDITNLEQIRALVASLEAGLR 540
            KDELLNDSSLGEVIAGQDESVSDSCLPSSQDPKDQDPTIVDITNLEQIRALVASLEAGLR
Sbjct: 481  KDELLNDSSLGEVIAGQDESVSDSCLPSSQDPKDQDPTIVDITNLEQIRALVASLEAGLR 540

Query: 541  FSACITSLMPTLVQLLASSSATDVENTILLLMRCRQFQIEGSEEALRKMLPLVFSQDKSI 600
            FSACITSLMPTLVQLLASSSATDVENTILLLMRCRQFQIEGSEEALRKMLPLVFSQDKSI
Sbjct: 541  FSACITSLMPTLVQLLASSSATDVENTILLLMRCRQFQIEGSEEALRKMLPLVFSQDKSI 600

Query: 601  YEAVESAFITIYTKKSPTETAKSLLNLTIECSIGDXXXXXXXXXXXXXKGEISSNTITAL 660
            YEAVESAFITIYTKKSPTETAKSLLNLTIECSIGD             KGEISSNTITAL
Sbjct: 601  YEAVESAFITIYTKKSPTETAKSLLNLTIECSIGDLAALESLVSSLVSKGEISSNTITAL 660

Query: 661  WDYFCFHINGVKPVQSRGALSILCMAAKSSPSILGTHLQDIIDIGFGRWAKEEPLLARTA 720
            WDYFCFHINGVKPVQSRGALSILCMAAKSSPSILGTHLQDIIDIGFGRWAKEEPLLARTA
Sbjct: 661  WDYFCFHINGVKPVQSRGALSILCMAAKSSPSILGTHLQDIIDIGFGRWAKEEPLLARTA 720

Query: 721  CIALQRLSNEDKVKLISTGSRVFAALQGLITSLSLPEKIWYGAADKAISAIYALHPAPEI 780
            CIALQRLSNEDKVKLISTGSRVFAALQGLITSLSLPEKIWYGAADKAISAIYALHPAPEI
Sbjct: 721  CIALQRLSNEDKVKLISTGSRVFAALQGLITSLSLPEKIWYGAADKAISAIYALHPAPEI 780

Query: 781  FAAQIVKKSLNSVFGVLGTDCMSNENETQNGSMLSSTPATNLGRFLFIISHIALNHLVYI 840
            FAAQIVKKSLNSVFGVLGTDCMSNENETQNGSMLSSTPATNLGRFLFIISHIALNHLVYI
Sbjct: 781  FAAQIVKKSLNSVFGVLGTDCMSNENETQNGSMLSSTPATNLGRFLFIISHIALNHLVYI 840

Query: 841  ETSVXXXXXXXXXXXXSEPTAEDLQADASKNSEAQGINAELGIGASVDIAIESLAEKAER 900
            ETSV            SEPTAEDLQADASKNSEAQGINAELGIGASVDIAIESLAEKAER
Sbjct: 841  ETSVKKIQKQKRKNDKSEPTAEDLQADASKNSEAQGINAELGIGASVDIAIESLAEKAER 900

Query: 901  EIVSNSEKNLIGYCAPFLAKLCRNLALLQKFPGLQASAMLALCKLMIIDAEFCEANLQIL 960
            EIVSNSEKNLIGYCAPFLAKLCRNLALLQKFPGLQASAMLALCKLMIIDAEFCEANLQIL
Sbjct: 901  EIVSNSEKNLIGYCAPFLAKLCRNLALLQKFPGLQASAMLALCKLMIIDAEFCEANLQIL 960

Query: 961  FTAAESAPSEVVRSNCTIALGDLVVRFPNLLEPWTEHIYARLRDPSASVRKNTVLVISHL 1020
            FTAAESAPSEVVRSNCTIALGDLVVRFPNLLEPWTEHIYARLRDPSASVRKNTVLVISHL
Sbjct: 961  FTAAESAPSEVVRSNCTIALGDLVVRFPNLLEPWTEHIYARLRDPSASVRKNTVLVISHL 1020

Query: 1021 ILNDMMKVKGFINEMAVRIEDEDERISSLAKLFFHELSKKGINPIYNLLPDILGRLCNQQ 1080
            ILNDMMKVKGFINEMAVRIEDEDERISSLAKLFFHELSKKGINPIYNLLPDILGRLCNQQ
Sbjct: 1021 ILNDMMKVKGFINEMAVRIEDEDERISSLAKLFFHELSKKGINPIYNLLPDILGRLCNQQ 1080

Query: 1081 LKDETFCSIMQFLISSIKKDKQMEALVDKLCNRFAGVNDVRQWEYISYCLSQLTFTEKGL 1140
            LKDETFCSIMQFLISSIKKDKQMEALVDKLCNRFAGVNDVRQWEYISYCLSQLTFTEKGL
Sbjct: 1081 LKDETFCSIMQFLISSIKKDKQMEALVDKLCNRFAGVNDVRQWEYISYCLSQLTFTEKGL 1140

Query: 1141 KKLVDNFKIFEHALSEDSVMNHFRTVIAKCKKFAKPDLKVCIEEFDEKLSKVHQEKKEQE 1200
            KKLVDNFKIFEHALSEDSVMNHFRTVIAKCKKFAKPDLKVCIEEFDEKLSKVHQEKKEQE
Sbjct: 1141 KKLVDNFKIFEHALSEDSVMNHFRTVIAKCKKFAKPDLKVCIEEFDEKLSKVHQEKKEQE 1200

Query: 1201 ATTRNAEAHKQRIGSLDKLMVTKRTGKDKGKXXXXXXXXXXXXDPSTESNSEDKENMPEC 1260
            ATTRNAEAHKQRIGSLDKLMVTKRTGKDKGK            DPSTESNSEDKENMPEC
Sbjct: 1201 ATTRNAEAHKQRIGSLDKLMVTKRTGKDKGKSAEVAEETSEVVDPSTESNSEDKENMPEC 1260

Query: 1261 SDNICSEKSHTSSTFTESDGDSTEVQSARTSCKGVSRSRINKMREPEDSEDSAPM 1315
            SDNICSEKSHTSSTFTESDGDSTEVQSARTSCKGVSRSRINKMREPEDSEDSAPM
Sbjct: 1261 SDNICSEKSHTSSTFTESDGDSTEVQSARTSCKGVSRSRINKMREPEDSEDSAPM 1315



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 38,932,917
Number of extensions: 1499850
Number of successful extensions: 4057
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 1
Length of query: 1325
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1212
Effective length of database: 11,135,619
Effective search space: 13496370228
Effective search space used: 13496370228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)