Os07g0659500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-SMC condensin subunit, XCAP-D2/Cnd1 family protein.
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Os07g0659500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-SMC condensin subunit, XCAP-D2/Cnd1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 255.73 | 0.751 | 6.15 | -1.21 | 1.84 | -0.45 | 1.23 | -3.83 | -0.821 | 8.38 | 30.22 | 1221 | -- | -- |
| 262.33 | 0.754 | 6.31 | -1.83 | 1.76 | -0.654 | 0.762 | -- | -0.9 | 8.05 | 30.4 | 1364 | -- | -- |
| 260.33 | 0.751 | 6.15 | -1.16 | 1.83 | -0.432 | -- | -3.78 | -0.823 | 8.31 | 30.22 | 1256 | -- | -- |
| 261.44 | 0.753 | 6.24 | -1.89 | 1.86 | -0.858 | -- | -- | -0.839 | 8.31 | 30.4 | 1231 | -- | -- |
| 441.51 | 0.979 | 6.18 | -0.993 | -- | -0.278 | -- | -4.58 | -0.84 | -- | 31.4 | 1433 | -- | -- |
| 294.75 | 0.805 | 6.28 | -1.66 | 1.81 | -- | 1.1 | -- | -1 | 8.07 | -- | -- | -- | -- |
| 298.35 | 0.809 | 6.28 | -1.63 | 1.81 | -- | -- | -- | -1.01 | 8.03 | -- | -- | -- | -- |
| 444.41 | 0.982 | 6.29 | -1.85 | -- | -0.783 | -- | -- | -0.811 | -- | 30.72 | 1434 | -- | -- |
| 349.65 | 0.871 | 6.2 | -- | 1.83 | -0.607 | -- | -- | -0.687 | 8.3 | 31.5 | 1171 | -- | -- |
| 478.44 | 1.02 | 6.32 | -1.61 | -- | -- | -- | -- | -0.983 | -- | -- | -- | -- | -- |
| 368.36 | 0.898 | 6.24 | -- | 1.8 | -- | -- | -- | -0.825 | 8.09 | -- | -- | -- | -- |
| 534.4 | 1.08 | 6.26 | -- | -- | -0.509 | -- | -- | -0.71 | -- | 31.1 | 2854 | -- | -- |
| 547.03 | 1.09 | 6.28 | -- | -- | -- | -- | -- | -0.804 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 2 | 245.93 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 7 | 246.39 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 9 | 246.60 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 11 | 246.74 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 13 | 246.79 | wind | 7.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 26 | 247.29 | temperature | 15.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 41 | 247.84 | wind | 7.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 47 | 248.03 | wind | 9.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 58 | 248.40 | wind | 7.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 67 | 248.72 | wind | 7.0 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 77 | 249.01 | wind | 9.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 80 | 249.03 | wind | 7.0 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 104 | 249.49 | wind | 9.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 116 | 249.55 | wind | 7.0 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 145 | 249.77 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 177 | 250.07 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 17 |
| 178 | 250.07 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 187 | 250.20 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 201 | 250.35 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 204 | 250.36 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 207 | 250.41 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 215 | 250.46 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 218 | 250.50 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 219 | 250.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 248 | 250.89 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 249 | 250.91 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 260 | 250.98 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 271 | 251.04 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 280 | 251.11 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 286 | 251.14 | wind | 7.0 | 30 | < th | dose dependent | rect. | 3 | 6 |
| 288 | 251.15 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 330 | 251.52 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 346 | 251.61 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 373 | 251.76 | wind | 9.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 379 | 251.80 | wind | 9.0 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 381 | 251.80 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 393 | 251.86 | wind | 9.0 | 43200 | < th | dose independent | no | NA | NA |
| 397 | 251.87 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 416 | 251.96 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 417 | 251.97 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 421 | 251.98 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 435 | 252.05 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 439 | 252.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 444 | 252.07 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 448 | 252.10 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 460 | 252.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 462 | 252.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 477 | 252.21 | wind | 9.0 | 43200 | > th | dose dependent | no | NA | NA |
| 489 | 252.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 494 | 252.24 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 506 | 252.29 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 529 | 252.35 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 532 | 252.36 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 533 | 252.36 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 543 | 252.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 572 | 252.46 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 574 | 252.46 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 575 | 252.46 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 577 | 252.46 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 578 | 252.46 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 591 | 252.48 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 600 | 252.51 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 657 | 252.68 | wind | 3.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 663 | 252.70 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 670 | 252.73 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 676 | 252.74 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 682 | 252.75 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 690 | 252.77 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 698 | 252.79 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 714 | 252.84 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 732 | 252.90 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 4 |
| 734 | 252.90 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 757 | 252.95 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 822 | 253.16 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 834 | 253.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 835 | 253.19 | wind | 9.0 | 43200 | > th | dose independent | no | NA | NA |
| 840 | 253.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 850 | 253.21 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 863 | 253.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 7 |
| 864 | 253.24 | humidity | 50.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 868 | 253.24 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 7 |
| 873 | 253.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 874 | 253.24 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 879 | 253.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 7 |
| 887 | 253.25 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 908 | 253.31 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 7 |
| 921 | 253.33 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 960 | 253.43 | wind | 9.0 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 962 | 253.44 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 981 | 253.48 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 986 | 253.49 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 23 |