BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0641800 Os07g0641800|AK120167
         (91 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0641800  Conserved hypothetical protein                      184   2e-47
AK071367                                                          100   3e-22

>Os07g0641800 Conserved hypothetical protein
          Length = 91

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MKTLVAVVDVFLICCPSIKNTSLHILILMNFLACFSDQFMKKLKMVAEKKVGATKAELFC 60
          MKTLVAVVDVFLICCPSIKNTSLHILILMNFLACFSDQFMKKLKMVAEKKVGATKAELFC
Sbjct: 1  MKTLVAVVDVFLICCPSIKNTSLHILILMNFLACFSDQFMKKLKMVAEKKVGATKAELFC 60

Query: 61 KTFEEAHKKLVYKELNLDAAQRFLNAYEKRS 91
          KTFEEAHKKLVYKELNLDAAQRFLNAYEKRS
Sbjct: 61 KTFEEAHKKLVYKELNLDAAQRFLNAYEKRS 91



>AK071367 
          Length = 81

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 51/56 (91%)

Query: 36 SDQFMKKLKMVAEKKVGATKAELFCKTFEEAHKKLVYKELNLDAAQRFLNAYEKRS 91
          SDQFMK L MVAEKKVGAT AELFCKTFEEAH +LVYKELNLDAAQRFLNAYE RS
Sbjct: 26 SDQFMKILMMVAEKKVGATLAELFCKTFEEAHMRLVYKELNLDAAQRFLNAYEIRS 81



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,232,204
Number of extensions: 62105
Number of successful extensions: 198
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)