Os07g0641800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0641800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.53 | 0.292 | 12 | -0.614 | 0.381 | -0.695 | 0.166 | 0.361 | -0.0739 | 23.4 | 19.4 | 3630 | -- | -- |
| 37.81 | 0.286 | 11.9 | -0.571 | 0.387 | -0.763 | 0.239 | -- | -0.0433 | 23.1 | 18.6 | 4034 | -- | -- |
| 37.63 | 0.286 | 11.9 | -0.599 | 0.386 | -0.909 | -- | -0.311 | -0.0556 | 23.2 | 18.4 | 4090 | -- | -- |
| 37.67 | 0.286 | 11.9 | -0.623 | 0.38 | -0.936 | -- | -- | -0.0523 | 23.2 | 18.49 | 3661 | -- | -- |
| 46.36 | 0.317 | 11.9 | -0.614 | -- | -1.09 | -- | -0.396 | -0.0599 | -- | 18.5 | 3758 | -- | -- |
| 47.7 | 0.324 | 11.9 | -0.155 | 0.406 | -- | 0.141 | -- | 0.109 | 23.4 | -- | -- | -- | -- |
| 47.79 | 0.324 | 11.9 | -0.161 | 0.406 | -- | -- | -- | 0.108 | 23.4 | -- | -- | -- | -- |
| 46.54 | 0.318 | 11.9 | -0.621 | -- | -0.967 | -- | -- | -0.0651 | -- | 18.4 | 3737 | -- | -- |
| 44 | 0.309 | 11.9 | -- | 0.394 | -0.499 | -- | -- | 0.0592 | 23 | 18.4 | 2784 | -- | -- |
| 58.11 | 0.356 | 11.9 | -0.15 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 48.47 | 0.326 | 11.9 | -- | 0.404 | -- | -- | -- | 0.126 | 23.4 | -- | -- | -- | -- |
| 52.72 | 0.338 | 11.9 | -- | -- | -0.545 | -- | -- | 0.06 | -- | 18.37 | 2331 | -- | -- |
| 58.7 | 0.358 | 11.9 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 33.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 5 | 33.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 7 | 34.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 12 | 34.56 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 16 | 34.68 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 18 | 34.73 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 19 | 34.75 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 25 | 34.91 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 29 | 34.99 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 30 | 35.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 32 | 35.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 36 | 35.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 39 | 35.10 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 44 | 35.13 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 47 | 35.15 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 64 | 35.28 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 73 | 35.32 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 83 | 35.35 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 111 | 35.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 114 | 35.43 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 115 | 35.43 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 9 |
| 127 | 35.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 140 | 35.51 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 176 | 35.60 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 194 | 35.66 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 197 | 35.66 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 209 | 35.69 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 237 | 35.75 | wind | 9 | 43200 | > th | dose independent | sin | 1 | NA |
| 247 | 35.76 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 264 | 35.78 | wind | 9 | 43200 | < th | dose independent | sin | 2 | NA |
| 314 | 35.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 334 | 35.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 352 | 35.95 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 387 | 36.06 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 389 | 36.06 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 391 | 36.06 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 407 | 36.10 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 428 | 36.14 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 432 | 36.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 438 | 36.16 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 476 | 36.19 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 491 | 36.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 522 | 36.25 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 547 | 36.28 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 551 | 36.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 573 | 36.32 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 595 | 36.34 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 596 | 36.34 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 616 | 36.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 617 | 36.36 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 649 | 36.39 | wind | 5 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 652 | 36.40 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 657 | 36.40 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 660 | 36.41 | wind | 3 | 43200 | > th | dose independent | sin | 5 | NA |
| 664 | 36.41 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 667 | 36.41 | wind | 9 | 43200 | < th | dose dependent | sin | 9 | NA |
| 672 | 36.42 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 681 | 36.42 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 683 | 36.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 730 | 36.46 | wind | 3 | 43200 | < th | dose independent | sin | 5 | NA |
| 734 | 36.46 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 777 | 36.49 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 19 |
| 782 | 36.49 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 16 |
| 809 | 36.50 | radiation | 20 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 823 | 36.51 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 845 | 36.53 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 875 | 36.54 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 876 | 36.54 | wind | 1 | 43200 | > th | dose dependent | sin | 9 | NA |
| 886 | 36.55 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 906 | 36.56 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 955 | 36.59 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 956 | 36.59 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 993 | 36.61 | wind | 7 | 43200 | > th | dose dependent | sin | 2 | NA |