BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0633800 Os07g0633800|AK103878
         (72 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0633800  Conserved hypothetical protein                      121   1e-28

>Os07g0633800 Conserved hypothetical protein
          Length = 72

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/72 (86%), Positives = 62/72 (86%)

Query: 1  MGGVEQEQLLSLGVLIDIVDEQWMRDTLXXXXXXXXXXMAVKTEEAEDPAPANQESQPAQ 60
          MGGVEQEQLLSLGVLIDIVDEQWMRDTL          MAVKTEEAEDPAPANQESQPAQ
Sbjct: 1  MGGVEQEQLLSLGVLIDIVDEQWMRDTLPADDVPVPPAMAVKTEEAEDPAPANQESQPAQ 60

Query: 61 GDVWRDFTLENL 72
          GDVWRDFTLENL
Sbjct: 61 GDVWRDFTLENL 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,284,690
Number of extensions: 55412
Number of successful extensions: 89
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)