BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0619500 Os07g0619500|AK072031
         (329 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0619500  Protein of unknown function DUF1645 family pro...   418   e-117

>Os07g0619500 Protein of unknown function DUF1645 family protein
          Length = 329

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/329 (70%), Positives = 232/329 (70%)

Query: 1   MEVMVPVMAPSAPCSPRTAAEHHHLPSYCYFFSSAPTSPTRASYXXXXXXXXXXXXXXXX 60
           MEVMVPVMAPSAPCSPRTAAEHHHLPSYCYFFSSAPTSPTRASY                
Sbjct: 1   MEVMVPVMAPSAPCSPRTAAEHHHLPSYCYFFSSAPTSPTRASYSGEAAAAAVGVGEGDG 60

Query: 61  XXXXXXXXXXQLRESTPILAAADELFEGGRIRPLNTPHPSILQLVDDSAYASPRSPGXXX 120
                     QLRESTPILAAADELFEGGRIRPLNTPHPSILQLVDDSAYASPRSPG   
Sbjct: 61  AFDFAFGFSGQLRESTPILAAADELFEGGRIRPLNTPHPSILQLVDDSAYASPRSPGRRR 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFRXXXXXXADDEYX 180
                                                        PFR      ADDEY 
Sbjct: 121 RIAAAEAAEVSSSSSSQRGRSGRAAPASSSSSASSRSRRATRSLSPFRGGGGGGADDEYP 180

Query: 181 XXXXXXRTSMMRGCGSGSRKWRLKDLFLFRSASEGRATGAGSKDPLLKYTMLXXXXXXXX 240
                 RTSMMRGCGSGSRKWRLKDLFLFRSASEGRATGAGSKDPLLKYTML        
Sbjct: 181 SSPPSPRTSMMRGCGSGSRKWRLKDLFLFRSASEGRATGAGSKDPLLKYTMLSSSASSAA 240

Query: 241 XXLHHNPQKLRGGGDGSASMRKGRGSTASASDMPYTVGRAAAEDMRRRTTTPLPFHRNSL 300
             LHHNPQKLRGGGDGSASMRKGRGSTASASDMPYTVGRAAAEDMRRRTTTPLPFHRNSL
Sbjct: 241 AALHHNPQKLRGGGDGSASMRKGRGSTASASDMPYTVGRAAAEDMRRRTTTPLPFHRNSL 300

Query: 301 FGYLRSNPAIHSISRKLSGSGSNRGKTAA 329
           FGYLRSNPAIHSISRKLSGSGSNRGKTAA
Sbjct: 301 FGYLRSNPAIHSISRKLSGSGSNRGKTAA 329



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,423,765
Number of extensions: 370059
Number of successful extensions: 1599
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1598
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)