Os07g0619500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1645 family protein.
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Os07g0619500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1645 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.9 | 0.585 | 9.2 | 3.13 | 0.804 | -1.12 | 0.0244 | 1.32 | 1.2 | 1.13 | 10.26 | 1435 | -- | -- |
| 157.87 | 0.585 | 9.22 | 2.99 | 0.817 | -1.19 | 0.12 | -- | 1.18 | 1.18 | 10.04 | 1442 | -- | -- |
| 154.9 | 0.58 | 9.2 | 3.13 | 0.804 | -1.12 | -- | 1.33 | 1.2 | 1.14 | 10.26 | 1435 | -- | -- |
| 157.74 | 0.585 | 9.22 | 2.94 | 0.815 | -1.1 | -- | -- | 1.17 | 1.07 | 10.25 | 1444 | -- | -- |
| 175.88 | 0.618 | 9.2 | 3.08 | -- | -1.45 | -- | 1.53 | 1.24 | -- | 10.03 | 1677 | -- | -- |
| 192.18 | 0.65 | 9.31 | 2.57 | 0.763 | -- | -0.15 | -- | 0.794 | 1.15 | -- | -- | -- | -- |
| 192.27 | 0.649 | 9.31 | 2.58 | 0.763 | -- | -- | -- | 0.794 | 1.12 | -- | -- | -- | -- |
| 177.03 | 0.62 | 9.2 | 2.97 | -- | -1.58 | -- | -- | 1.21 | -- | 10.03 | 1680 | -- | -- |
| 333.65 | 0.851 | 9.27 | -- | 0.946 | -1.19 | -- | -- | 0.9 | 1.17 | 30 | 8608 | -- | -- |
| 228.37 | 0.706 | 9.3 | 2.61 | -- | -- | -- | -- | 0.81 | -- | -- | -- | -- | -- |
| 367.25 | 0.896 | 9.37 | -- | 0.806 | -- | -- | -- | 0.507 | 1.25 | -- | -- | -- | -- |
| 291.76 | 0.796 | 9.38 | -- | -- | -1.66 | -- | -- | 0.663 | -- | 58.8 | 33318 | -- | -- |
| 407.47 | 0.942 | 9.36 | -- | -- | -- | -- | -- | 0.521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.17 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 9 |
| 2 | 151.73 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 16 |
| 3 | 151.99 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 6 | 152.20 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 24 | 152.81 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 39 | 152.97 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 40 | 152.97 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 46 | 153.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 50 | 153.14 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 58 | 153.69 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 87 | 153.99 | radiation | 20 | 1440 | < th | dose dependent | sin | 19 | NA |
| 90 | 154.02 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 95 | 154.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 17 |
| 101 | 154.10 | radiation | 10 | 720 | < th | dose independent | sin | 15 | NA |
| 102 | 154.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 104 | 154.12 | radiation | 10 | 720 | < th | dose dependent | sin | 15 | NA |
| 112 | 154.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 135 | 154.28 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 176 | 154.63 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 223 | 154.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 248 | 154.97 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 356 | 155.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 382 | 155.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 484 | 155.91 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 504 | 156.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 555 | 156.19 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 574 | 156.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 713 | 156.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 803 | 156.69 | radiation | 1 | 1440 | > th | dose dependent | sin | 18 | NA |
| 804 | 156.69 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 7 |