BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0618500 Os07g0618500|AK068975
(532 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0618500 Similar to Dihydropterin pyrophosphokinase /di... 1014 0.0
>Os07g0618500 Similar to Dihydropterin pyrophosphokinase /dihydropteroate
synthase precursor (EC 2.5.1.15)
Length = 532
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/532 (93%), Positives = 500/532 (93%)
Query: 1 MLRAKETFRKMYSVAKNYCXXXXXXXXXXXXXXXXRSLKPSRKASRHVVPCRARSFTQCS 60
MLRAKETFRKMYSVAKNYC RSLKPSRKASRHVVPCRARSFTQCS
Sbjct: 1 MLRAKETFRKMYSVAKNYCGGGLAASDALSVSALGRSLKPSRKASRHVVPCRARSFTQCS 60
Query: 61 LGGGSADQEIVIALGSNVGDRISTFDRALRMMKNSGVNITRHACLYETSPAYVTDQPRFL 120
LGGGSADQEIVIALGSNVGDRISTFDRALRMMKNSGVNITRHACLYETSPAYVTDQPRFL
Sbjct: 61 LGGGSADQEIVIALGSNVGDRISTFDRALRMMKNSGVNITRHACLYETSPAYVTDQPRFL 120
Query: 121 NSAVRGTTXXXXXXXXXXXXXXXXDIGRTDGIRYGPRPIDLDILLYGKSHISTENLTVPH 180
NSAVRGTT DIGRTDGIRYGPRPIDLDILLYGKSHISTENLTVPH
Sbjct: 121 NSAVRGTTKLEPHELLKKLKEIEKDIGRTDGIRYGPRPIDLDILLYGKSHISTENLTVPH 180
Query: 181 ERIHERPFVLAPLVDLLGSSTDDNVEKSWHSLAKCTGGFFESWDKLGGESIIGTEGIKRV 240
ERIHERPFVLAPLVDLLGSSTDDNVEKSWHSLAKCTGGFFESWDKLGGESIIGTEGIKRV
Sbjct: 181 ERIHERPFVLAPLVDLLGSSTDDNVEKSWHSLAKCTGGFFESWDKLGGESIIGTEGIKRV 240
Query: 241 LPVGNRLLDWSERTLVMGVLNLTPDSFSDGGKFQEVEAAIAQTKLLISEGADIIDIGAQS 300
LPVGNRLLDWSERTLVMGVLNLTPDSFSDGGKFQEVEAAIAQTKLLISEGADIIDIGAQS
Sbjct: 241 LPVGNRLLDWSERTLVMGVLNLTPDSFSDGGKFQEVEAAIAQTKLLISEGADIIDIGAQS 300
Query: 301 TRPLARRLSADEELERLVPVLDAITGIPEMEGKLLSVDTFYAEVAAEAVKRGVHIVNDVS 360
TRPLARRLSADEELERLVPVLDAITGIPEMEGKLLSVDTFYAEVAAEAVKRGVHIVNDVS
Sbjct: 301 TRPLARRLSADEELERLVPVLDAITGIPEMEGKLLSVDTFYAEVAAEAVKRGVHIVNDVS 360
Query: 361 GGQIDPRILEVVAELGVPYVTMHMRGDPSTMQSEQNLLYGDVCKEVASELYKRVRQAELS 420
GGQIDPRILEVVAELGVPYVTMHMRGDPSTMQSEQNLLYGDVCKEVASELYKRVRQAELS
Sbjct: 361 GGQIDPRILEVVAELGVPYVTMHMRGDPSTMQSEQNLLYGDVCKEVASELYKRVRQAELS 420
Query: 421 GIPLWRIVLDPGIGFSKNSKHNLEVIMGLESIRTEIGKMSLGASHVPILLGPSRKRFLGE 480
GIPLWRIVLDPGIGFSKNSKHNLEVIMGLESIRTEIGKMSLGASHVPILLGPSRKRFLGE
Sbjct: 421 GIPLWRIVLDPGIGFSKNSKHNLEVIMGLESIRTEIGKMSLGASHVPILLGPSRKRFLGE 480
Query: 481 ICNRVNPTERDAATMVVATAGILNGANIVRVHNVKYGVDTAKVSDALSKGRR 532
ICNRVNPTERDAATMVVATAGILNGANIVRVHNVKYGVDTAKVSDALSKGRR
Sbjct: 481 ICNRVNPTERDAATMVVATAGILNGANIVRVHNVKYGVDTAKVSDALSKGRR 532
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,800,658
Number of extensions: 698642
Number of successful extensions: 1515
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 426
Effective length of database: 11,501,117
Effective search space: 4899475842
Effective search space used: 4899475842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)