BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0611700 Os07g0611700|AK109158
         (277 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0611700  Peptidase C1A, papain family protein                418   e-117
Os07g0612200                                                      122   4e-28
Os05g0485600                                                       72   5e-13

>Os07g0611700 Peptidase C1A, papain family protein
          Length = 277

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/240 (85%), Positives = 205/240 (85%)

Query: 38  LRTLRDLGVGHGAVKXXXXXXXXXXXXXXXXXYFKQDRDDSAWEYTRKEEETVKWRDVIE 97
           LRTLRDLGVGHGAVK                 YFKQDRDDSAWEYTRKEEETVKWRDVIE
Sbjct: 38  LRTLRDLGVGHGAVKGALALTSSLAGLLLGFLYFKQDRDDSAWEYTRKEEETVKWRDVIE 97

Query: 98  PSVMARFTRKDGTFAYPEYYGYLRVQMNGGKPNYDQKCSXXXXXXXXXXXXXXXXXXGNN 157
           PSVMARFTRKDGTFAYPEYYGYLRVQMNGGKPNYDQKCS                  GNN
Sbjct: 98  PSVMARFTRKDGTFAYPEYYGYLRVQMNGGKPNYDQKCSDKVEEAIVDADAADTDEDGNN 157

Query: 158 AVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGINELNIKRGMRSPLAAPTE 217
           AVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGINELNIKRGMRSPLAAPTE
Sbjct: 158 AVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGINELNIKRGMRSPLAAPTE 217

Query: 218 LADYTDEEVERLGITMADDSDWDEYLDHIHTAIARYMATIKRIRSFVLEASNYILIYVFP 277
           LADYTDEEVERLGITMADDSDWDEYLDHIHTAIARYMATIKRIRSFVLEASNYILIYVFP
Sbjct: 218 LADYTDEEVERLGITMADDSDWDEYLDHIHTAIARYMATIKRIRSFVLEASNYILIYVFP 277



>Os07g0612200 
          Length = 195

 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 78/134 (58%), Gaps = 10/134 (7%)

Query: 42  RDLGVGHGAVKXXXXXXXXXXXXXXXXXYFKQDRDDSAWEYTRKEEE---TVKWRDVIEP 98
           RDLGVG GAVK                 YFKQDRDDSA     ++EE   TV WRDVIEP
Sbjct: 67  RDLGVGRGAVKGVLALTSSLAGLLLGFLYFKQDRDDSAAGEETRKEEEEVTVNWRDVIEP 126

Query: 99  SVMARFTRKDGTFAYPEYYGYLRVQMN-GGKPNYDQKCSXXXXXXXXXXXXXXXXXXGNN 157
           SVMARFTRKDGTFAY +Y  YL  QMN GGKP YD+KCS                   +N
Sbjct: 127 SVMARFTRKDGTFAYLDYIDYLNSQMNHGGKPLYDKKCSDKEEAVVDDAAEE------DN 180

Query: 158 AVDEPAMKAKFEDW 171
            VDE  MKAKFEDW
Sbjct: 181 VVDEVTMKAKFEDW 194



>Os05g0485600 
          Length = 306

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 84/192 (43%), Gaps = 21/192 (10%)

Query: 71  FKQDRDDSAWEYTRKEEETVKWRDVI----------EPSVMARFTRKDGTFAYPEYYGYL 120
           FKQ+ D S      KEE T K               E ++ A F  KDG   +  Y  Y+
Sbjct: 105 FKQNTDKSGAREEDKEEVTKKLPAAQDAGKEPYLSKEAAIEAGFVDKDGKILWSSYLNYV 164

Query: 121 RVQMNGGKPNYDQKCSXXXXXXXXXXXXXXXXXXGNNAVDEPAMKAKFEDWMKEHGRIYI 180
                 GK   D +                        VDE  MKA+F D MKE+GR Y 
Sbjct: 165 ----EHGKTLPDDEAFAKEARDYQEAIKKQEVK-----VDEATMKARFHDLMKEYGRSYS 215

Query: 181 TKKEKAHRYENFKKAMKGINELNIKRGMRSPLAAPTELADYTDEEVERLGITMADDSDWD 240
           T++EKA RYE FK+A    +++N       P   P   AD+TDEE +R+    +   DW+
Sbjct: 216 TEEEKARRYEVFKEATLWADKVNALEPRTIPY-GPNGYADFTDEEFKRMHCHCS-AIDWE 273

Query: 241 EYLDHIHTAIAR 252
            Y+D ++T  AR
Sbjct: 274 RYIDELNTMAAR 285



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,272,118
Number of extensions: 267076
Number of successful extensions: 643
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)