Os07g0611700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C1A, papain family protein.
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Os07g0611700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C1A, papain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.67 | 0.659 | 5.37 | 2.58 | 0.574 | -4 | -0.761 | -7.01 | -2.38 | 21.8 | 20.07 | 4847 | -- | -- |
| 209.14 | 0.674 | 5.53 | 2.73 | 0.452 | -1.26 | -0.508 | -- | -2.48 | 21.8 | 24.67 | 2161 | -- | -- |
| 198.55 | 0.656 | 5.36 | 2.59 | 0.547 | -4.37 | -- | -7.74 | -2.38 | 21.8 | 19.6 | 4836 | -- | -- |
| 210.13 | 0.675 | 5.55 | 2.71 | 0.518 | -1.16 | -- | -- | -2.44 | 21.6 | 24.7 | 2219 | -- | -- |
| 217.76 | 0.687 | 5.33 | 2.53 | -- | -4.7 | -- | -8.34 | -2.38 | -- | 19.89 | 5181 | -- | -- |
| 231.74 | 0.714 | 5.48 | 3.14 | 0.597 | -- | -0.701 | -- | -2.16 | 21.9 | -- | -- | -- | -- |
| 233.65 | 0.716 | 5.48 | 3.17 | 0.6 | -- | -- | -- | -2.16 | 21.9 | -- | -- | -- | -- |
| 222.78 | 0.695 | 5.53 | 2.78 | -- | -1.39 | -- | -- | -2.46 | -- | 27.89 | 793 | -- | -- |
| 217.33 | 0.687 | 5.74 | -- | 0.562 | -2.7 | -- | -- | -3.32 | 21.6 | 43.76 | 47520 | -- | -- |
| 255.25 | 0.747 | 5.47 | 3.18 | -- | -- | -- | -- | -2.16 | -- | -- | -- | -- | -- |
| 498.23 | 1.04 | 5.56 | -- | 0.614 | -- | -- | -- | -2.51 | 22.3 | -- | -- | -- | -- |
| 235.24 | 0.714 | 5.73 | -- | -- | -2.72 | -- | -- | -3.33 | -- | 36.12 | 46956 | -- | -- |
| 521.19 | 1.07 | 5.55 | -- | -- | -- | -- | -- | -2.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 2 | 187.98 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 4 | 188.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 16 |
| 34 | 189.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 41 | 189.35 | wind | 1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 71 | 189.98 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 78 | 190.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 95 | 190.42 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 111 | 190.57 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 113 | 190.58 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 117 | 190.61 | wind | 1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 118 | 190.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 121 | 190.63 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 20 |
| 125 | 190.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 10 |
| 134 | 190.73 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 141 | 190.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 144 | 190.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 146 | 190.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 154 | 190.85 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 155 | 190.86 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 13 |
| 159 | 190.90 | wind | 1 | 43200 | > th | dose independent | sin | 10 | NA |
| 164 | 190.93 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 168 | 190.95 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 209 | 191.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 273 | 191.62 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 314 | 191.88 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 348 | 192.03 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 360 | 192.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 13 |
| 363 | 192.09 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 20 |
| 371 | 192.13 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 20 |
| 381 | 192.19 | wind | 1 | 43200 | < th | dose independent | sin | 12 | NA |
| 404 | 192.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 407 | 192.28 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 408 | 192.29 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 410 | 192.29 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 419 | 192.33 | wind | 1 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 425 | 192.35 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 441 | 192.39 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 456 | 192.47 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 471 | 192.53 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 472 | 192.53 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 475 | 192.54 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 478 | 192.55 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 480 | 192.56 | wind | 1 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 527 | 192.72 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 539 | 192.76 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 590 | 192.92 | wind | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 611 | 192.97 | wind | 1 | 14400 | < th | dose independent | sin | 1 | NA |
| 621 | 192.99 | humidity | 50 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 636 | 193.01 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 638 | 193.01 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 640 | 193.02 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 641 | 193.02 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 681 | 193.11 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 686 | 193.13 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 707 | 193.17 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 722 | 193.20 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 753 | 193.25 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 777 | 193.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 784 | 193.33 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 807 | 193.37 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 817 | 193.38 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 850 | 193.42 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 852 | 193.43 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 975 | 193.66 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 13 |