BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0611400 Os07g0611400|Os07g0611400
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0611400 396 e-111
Os07g0610700 189 1e-48
Os07g0611500 Protein kinase C, phorbol ester/diacylglycerol... 146 1e-35
Os07g0610200 139 2e-33
Os07g0611200 125 2e-29
Os07g0610100 94 8e-20
Os07g0609800 75 6e-14
>Os07g0611400
Length = 228
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/228 (88%), Positives = 202/228 (88%)
Query: 1 MENRWHVAHPQHQLQRCTYNQRDQISHRACNICELPITGVGYRCNHHHCSDFTIHEACAD 60
MENRWHVAHPQHQLQRCTYNQRDQISHRACNICELPITGVGYRCNHHHCSDFTIHEACAD
Sbjct: 1 MENRWHVAHPQHQLQRCTYNQRDQISHRACNICELPITGVGYRCNHHHCSDFTIHEACAD 60
Query: 61 RFARDTIHGFFAHPRHPLTAVVASANPGWCDLCQGRIQPGRLVYRCAECAFDVHPLCTLL 120
RFARDTIHGFFAHPRHPLTAVVASANPGWCDLCQGRIQPGRLVYRCAECAFDVHPLCTLL
Sbjct: 61 RFARDTIHGFFAHPRHPLTAVVASANPGWCDLCQGRIQPGRLVYRCAECAFDVHPLCTLL 120
Query: 121 PMTIHPAAGCHGHVLNLVPARGECAACHRDCSIWHYRCGLCLFMLHIGCVSXXXXXXXXX 180
PMTIHPAAGCHGHVLNLVPARGECAACHRDCSIWHYRCGLCLFMLHIGCVS
Sbjct: 121 PMTIHPAAGCHGHVLNLVPARGECAACHRDCSIWHYRCGLCLFMLHIGCVSPAGAGGAPA 180
Query: 181 XXXXXXXXXXXXXXXXXSSPIVRFLIMFARQLAVNLIVNDITDILNAL 228
SSPIVRFLIMFARQLAVNLIVNDITDILNAL
Sbjct: 181 GARGWPATGGGGGWAGGSSPIVRFLIMFARQLAVNLIVNDITDILNAL 228
>Os07g0610700
Length = 242
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 95/106 (89%), Gaps = 2/106 (1%)
Query: 21 QRDQISHRACNICELPITGVGYRCNHHHCSDFTIHEACADRFARDTIHGFFAHPRHPLTA 80
Q SHRACNICELP+TGVGYRCNHH CSDF IHEACADRFARDTI GFFAHPRHPLTA
Sbjct: 38 QPADQSHRACNICELPVTGVGYRCNHH-CSDFAIHEACADRFARDTIDGFFAHPRHPLTA 96
Query: 81 VVASA-NPGWCDLCQGRIQPGRLVYRCAECAFDVHPLCTLLPMTIH 125
ASA NPGWCDLCQG IQPGRLVYRCAECAFDVHPLCTLLPMTIH
Sbjct: 97 ATASAANPGWCDLCQGPIQPGRLVYRCAECAFDVHPLCTLLPMTIH 142
>Os07g0611500 Protein kinase C, phorbol ester/diacylglycerol binding domain
containing protein
Length = 259
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 104/172 (60%), Gaps = 15/172 (8%)
Query: 6 HVAHPQHQLQRCTYNQRDQISHRACNICELPITG-VGYRCNHHHCSDFTIHEACADRFAR 64
H AHPQH+L + Y+ S C+ICE ++G VGYRCN DF IHEACAD F +
Sbjct: 9 HFAHPQHRLLKTPYSS---ASRHVCDICEAKLSGLVGYRCN---ACDFDIHEACADYF-K 61
Query: 65 DTIHGFFAHPRHPLTAV-VASANPGW-CDLCQGRIQPGRLVYRCAECAFDVHPLCTLLPM 122
+TI FFAHP H LT + N GW CDLC PG VYRC +C FDVHPLCTLLP
Sbjct: 62 ETI-SFFAHPWHTLTLCRMPPENKGWVCDLCMEHCPPGNFVYRCIQCKFDVHPLCTLLPQ 120
Query: 123 TIHPAAGCHGHVLNLVPARGECAACHRDCSIWHYRCGLCL---FMLHIGCVS 171
TI H H LN+VP+ G C AC +WHY CG C + LHIGCVS
Sbjct: 121 TIRSPLHPH-HDLNMVPSSGHCNACPERLPVWHYICGPCTSPSYRLHIGCVS 171
>Os07g0610200
Length = 237
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 118/239 (49%), Gaps = 25/239 (10%)
Query: 2 ENRWHVAHPQHQLQRCTYNQRDQISHRACNICELPITG-VGYRCNHHHCSDFTIHEACAD 60
R H AHPQH L R Y+ S C+IC + G VGYRCN D IH+ACAD
Sbjct: 4 RQRRHFAHPQHLLLRTHYST---TSSHFCDICRTNVAGMVGYRCN---TCDIDIHDACAD 57
Query: 61 RFARDTIHGFFAHPRHPLTAVV---ASANPGWCDLCQGRIQPGRLVYRCAECAFDVHPLC 117
F +T+ FFAHP H LT N CDLC G VYRCA+C FD HPLC
Sbjct: 58 YF-EETV-SFFAHPWHTLTLSTIPDDDTNRWSCDLCTESCPRGSFVYRCAQCGFDAHPLC 115
Query: 118 TLLPMTI----HPAAGCHGHVLNLVPARGECAACHRDCSIWHYRCGLCLFMLHIGCVSXX 173
TLLP TI HP H LN+ P+ G C+ACH+ ++WHYRCG CL+ LH+ C S
Sbjct: 116 TLLPQTIRSPLHPQ-----HDLNMAPSWGTCSACHQGLNMWHYRCGFCLYKLHVVCPSGA 170
Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXSS---PIVRFLIMFARQLAVNLIVNDI-TDILNAL 228
SS I +FL+ + +A+N + T +L+ L
Sbjct: 171 ANAGQGDTSRSHNAGAGAAAATPGSSRATRIAKFLLRTSLNIAINAATGALATPVLDVL 229
>Os07g0611200
Length = 203
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 114/230 (49%), Gaps = 44/230 (19%)
Query: 6 HVAHPQHQLQRCTYNQRDQISHRACNICELPITG-VGYRCNHHHCSDFTIHEACADRFAR 64
H AHPQH L + Y D S C+IC ++G VGYRCN DF IH+ACAD F +
Sbjct: 9 HFAHPQHLLLKTRY---DSTSRHVCDICRAKLSGLVGYRCN---ACDFDIHQACADYFKK 62
Query: 65 DTIHGFFAHPRHPLT-AVVASANPGW-CDLCQGRIQPGRLVYRCAECAFDVHPLCTLLPM 122
FFAHP H LT + + + W CDLC+ G VYRC +CAFDVHPLC LLP
Sbjct: 63 TI--SFFAHPWHTLTLSSIPDGSTTWSCDLCRENCPRGNFVYRCIQCAFDVHPLCILLPQ 120
Query: 123 TIHPAAGCHGHVLNLVPARGECAACHRDCSIWHYRCGLCLFMLHIGCVSXXXXXXXXXXX 182
TI H +++VP+ G C+AC D +W+Y + ++ C
Sbjct: 121 TIRSPLH-QQHDIHMVPSWGRCSACREDLDLWYYHDAQSIAIVRRSC------------- 166
Query: 183 XXXXXXXXXXXXXXXSSPIVRFLIMFARQLAVNL----IVNDITDILNAL 228
SS I +FL+ + +A+NL + + + D+L A+
Sbjct: 167 ---------------SSGITKFLVKKSFMVAINLATGGLASPVLDVLEAV 201
>Os07g0610100
Length = 231
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 87/184 (47%), Gaps = 29/184 (15%)
Query: 2 ENRWHVAHPQHQLQRCTYN--QRDQISHRACNICELPI-TGVGYRCNHHHCSDFTIHEAC 58
E+R H AHPQH L + Y +R S C IC + G GYRC+H DF IHEAC
Sbjct: 50 ESRTHFAHPQHPLLKTQYGGGERQPSSRHVCRICGTRVVAGAGYRCDH---CDFDIHEAC 106
Query: 59 ADRFARDTIH---GFFAHPRHPLTAV--VASANPGW-CDLCQGRIQPGRLVYRCA--ECA 110
AD F I FF HP A+ V +A+ W C LC+G Q G L YRC C
Sbjct: 107 ADFFPEKMITPPPNFFGHPWSHNLALRQVTAADGSWPCTLCRGPFQHGHLAYRCGARRCG 166
Query: 111 FDVHPLCTLLPMTI----HPAAGCHGHVLNLVPARG--------ECAACHRDCS---IWH 155
F HPLCT+LP I H L L+P+ C+ C RDCS H
Sbjct: 167 FAAHPLCTMLPGEIRSPLHRKHALTHTELMLIPSGPCTPAEMARVCSVCRRDCSTVRTRH 226
Query: 156 YRCG 159
YRC
Sbjct: 227 YRCA 230
>Os07g0609800
Length = 167
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 9 HPQHQLQRCTYNQRDQISHR-ACNICELPITGVGYRCNHHHCSDFTIHEACADRFARDTI 67
HP H L+R Y + H C +CE I G GYRC C F HEAC R
Sbjct: 10 HPGHSLKRHHYGGEE--GHACVCALCERIIAGAGYRCGE--CGGFDAHEACLSLPMRVA- 64
Query: 68 HGFFAHPRHPLTAVVASANPGWCDLCQGRIQPGRLVYRCAECAFDVHPLCTLL 120
F HP H LT + +A+ WCD C+ GR VYRC C FDVH CT L
Sbjct: 65 --FVGHPAHELTLSLLTASR-WCDACRVASHAGRCVYRCVACDFDVHARCTSL 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.142 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,727,005
Number of extensions: 309290
Number of successful extensions: 910
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 10
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 154 (63.9 bits)