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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0611400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.63 (--) R2 : -2.06
β1 : -0.734 (--) R2dD : -0.381 R2D : -2.09
β2 : 0.00621 (--) R2dC : 0.000757 R2C : -1.71
β3 : -32.1 (--) R2dE : -- R2E : --
β4 : 0.282 (--) R2dD*C : 0.00878 R2D*C : -1.71
β5 : -68.6 (--) R2dD*E : -- R2D*E : --
γ1 : 0.0189 (--) R2dN8 : 0.0282 R2N8 : -1.67
σ : 0.316
deviance : 45.11
__
_____
C
peak time of C : 12.7
E
wheather : temperature
threshold : 2
memory length : 6
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.11 0.316 2.63 -0.734 0.00621 -32.1 0.282 -68.6 0.0189 12.7 2 6 -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
47.62 0.324 3.05 0.0872 0.0171 -- 0.207 -- 0.0038 12.6 -- -- -- --
47.8 0.324 3.05 0.0949 0.018 -- -- -- 0.00468 10.9 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
47.82 0.323 3.05 0.0945 -- -- -- -- 0.00455 -- -- -- -- --
48.04 0.324 3.05 -- 0.0173 -- -- -- -0.00589 10.6 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
48.06 0.324 3.05 -- -- -- -- -- -0.00593 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.46 radiation 30.0 1440 < th dose dependent rect. 21 1
3 37.47 temperature 10.0 1440 > th dose independent rect. 21 1
6 37.47 temperature 30.0 1440 < th dose independent rect. 21 1
10 37.47 humidity 50.0 1440 > th dose independent rect. 21 1
16 37.47 atmosphere 995.0 1440 > th dose independent rect. 21 1
17 37.47 radiation 1.0 1440 < th dose independent rect. 21 1
37 37.47 temperature 10.0 1440 > th dose independent rect. 22 23
42 37.62 atmosphere 1005.0 30 > th dose dependent rect. 20 1
43 37.63 temperature 25.0 30 > th dose independent rect. 20 1
44 37.65 radiation 40.0 14400 < th dose dependent rect. 21 1
47 37.73 wind 3.0 30 > th dose independent rect. 20 1
48 37.73 humidity 80.0 30 > th dose independent rect. 20 1
50 37.74 temperature 20.0 30 > th dose dependent rect. 20 1
54 37.81 atmosphere 1005.0 30 > th dose independent rect. 20 1
58 37.86 humidity 90.0 30 < th dose independent rect. 20 1
60 37.91 wind 5.0 30 < th dose independent rect. 20 1
64 37.94 wind 1.0 30 > th dose dependent rect. 20 1
67 37.96 temperature 10.0 30 > th dose independent rect. 20 1
69 37.96 temperature 30.0 30 < th dose independent rect. 20 1
70 37.96 humidity 50.0 30 > th dose independent rect. 20 1
74 37.96 atmosphere 1010.0 30 < th dose independent rect. 20 1
76 37.96 radiation 1.0 30 < th dose independent rect. 20 1
81 37.96 precipitation 0.1 30 < th dose independent rect. 20 1
82 37.96 temperature 10.0 30 > th dose independent rect. 21 23
83 37.96 humidity 50.0 30 > th dose dependent rect. 20 1
84 37.96 radiation 1.0 30 < th dose dependent rect. 20 1
90 37.96 precipitation 0.1 30 < th dose dependent rect. 20 1
94 38.05 wind 9.0 30 < th dose dependent rect. 20 1
99 38.50 humidity 90.0 30 < th dose dependent rect. 20 1
101 38.53 atmosphere 1015.0 30 < th dose dependent rect. 20 1
105 38.89 temperature 30.0 30 < th dose dependent rect. 20 1
107 39.01 wind 9.0 1440 < th dose independent rect. 21 1
151 40.39 wind 9.0 30 < th dose independent rect. 21 23
174 43.76 radiation 20.0 10 < th dose dependent rect. 21 23
175 43.78 temperature 15.0 720 > th dose independent rect. 9 8
176 43.80 atmosphere 995.0 30 > th dose independent rect. 21 23
178 43.87 temperature 15.0 1440 > th dose independent rect. 21 7
188 44.26 temperature 15.0 720 > th dose independent rect. 5 16
191 44.35 temperature 15.0 1440 > th dose independent rect. 8 5
196 44.42 atmosphere 1015.0 720 < th dose independent rect. 1 8
198 44.42 temperature 15.0 1440 > th dose independent rect. 21 16
203 44.45 temperature 10.0 30 > th dose dependent rect. 21 23
207 44.51 temperature 15.0 10 > th dose dependent rect. 24 20
213 44.55 temperature 15.0 10 > th dose dependent rect. 3 17
216 44.56 temperature 15.0 1440 > th dose independent rect. 21 20
217 44.56 radiation 10.0 10 < th dose independent rect. 21 23
218 44.57 temperature 15.0 720 > th dose independent rect. 9 23
226 44.64 wind 7.0 90 < th dose independent rect. 3 16
230 44.66 precipitation 0.1 30 < th dose independent rect. 21 23
231 44.66 precipitation 0.1 30 < th dose dependent rect. 21 23
233 44.68 temperature 15.0 90 > th dose independent rect. 3 16
238 44.70 wind 7.0 10 < th dose independent rect. 24 20
240 44.74 wind 7.0 10 < th dose independent rect. 3 17
248 44.77 humidity 50.0 14400 > th dose independent rect. 21 12
249 44.78 temperature 15.0 1440 > th dose independent rect. 21 12
255 44.80 temperature 15.0 1440 > th dose independent rect. 10 3
259 44.81 temperature 15.0 1440 > th dose independent rect. 23 5
265 44.85 temperature 15.0 1440 > th dose independent rect. 8 20
267 44.85 temperature 15.0 1440 > th dose independent rect. 6 22
274 44.88 temperature 15.0 720 > th dose independent rect. 17 16
275 44.89 atmosphere 1015.0 1440 < th dose independent rect. 24 4
277 44.89 temperature 15.0 1440 > th dose independent rect. 21 14
280 44.90 temperature 15.0 4320 > th dose independent rect. 12 1
281 44.90 temperature 15.0 4320 > th dose independent rect. 12 5
283 44.90 temperature 15.0 1440 > th dose independent rect. 23 14
286 44.91 atmosphere 1015.0 1440 < th dose independent rect. 17 2
290 44.92 wind 9.0 1440 < th dose independent rect. 21 13
297 44.94 temperature 15.0 1440 > th dose independent rect. 8 17
301 44.96 atmosphere 1015.0 1440 < th dose independent rect. 24 1
303 44.96 atmosphere 1010.0 10 < th dose independent rect. 8 12
313 44.98 temperature 15.0 4320 > th dose independent rect. 10 7
315 44.98 precipitation 0.1 720 > th dose independent rect. 5 9
328 45.00 atmosphere 1015.0 720 < th dose independent rect. 23 10
339 45.02 temperature 15.0 1440 > th dose independent rect. 23 18
346 45.04 precipitation 0.1 720 > th dose dependent rect. 5 9
349 45.05 precipitation 0.1 720 > th dose independent sin 3 NA
356 45.07 temperature 15.0 720 > th dose independent rect. 1 8
361 45.07 precipitation 0.1 720 > th dose dependent sin 3 NA
362 45.07 temperature 15.0 1440 < th dose dependent rect. 1 2
364 45.07 humidity 90.0 720 > th dose dependent rect. 10 4
368 45.08 temperature 15.0 1440 < th dose independent sin 0 NA
373 45.08 temperature 15.0 1440 < th dose independent rect. 24 7
387 45.08 temperature 15.0 1440 > th dose independent rect. 6 19
390 45.08 temperature 15.0 1440 < th dose dependent sin 0 NA
393 45.08 temperature 15.0 1440 < th dose dependent rect. 3 1
423 45.09 temperature 15.0 1440 < th dose independent sin 22 NA
427 45.09 temperature 15.0 1440 < th dose independent rect. 1 1
428 45.09 temperature 15.0 1440 < th dose independent rect. 3 1
472 45.09 temperature 15.0 1440 < th dose dependent sin 22 NA
480 45.09 atmosphere 1015.0 4320 > th dose dependent rect. 14 6
491 45.10 temperature 15.0 720 < th dose independent sin 11 NA
492 45.10 precipitation 0.1 720 < th dose independent sin 3 NA
493 45.10 atmosphere 1015.0 4320 > th dose independent rect. 18 1
500 45.10 temperature 15.0 1440 < th dose independent rect. 3 4
521 45.10 temperature 15.0 720 < th dose independent rect. 19 11
526 45.10 temperature 15.0 720 > th dose independent rect. 4 14
534 45.10 temperature 15.0 720 < th dose independent rect. 18 16
542 45.10 temperature 15.0 720 < th dose independent rect. 14 21
543 45.10 temperature 15.0 720 < th dose independent rect. 17 21
559 45.10 precipitation 0.1 720 < th dose dependent sin 3 NA
560 45.10 atmosphere 1015.0 4320 > th dose dependent rect. 18 1
570 45.10 humidity 90.0 720 > th dose dependent rect. 8 6
571 45.10 temperature 15.0 1440 < th dose dependent rect. 3 7
583 45.10 temperature 15.0 720 < th dose dependent rect. 22 13
607 45.11 temperature 15.0 720 < th dose independent no NA NA
608 45.11 humidity 60.0 43200 < th dose independent rect. 23 1
609 45.11 atmosphere 1015.0 4320 > th dose independent rect. 15 1
613 45.11 temperature 20.0 720 < th dose independent rect. 11 2
620 45.11 precipitation 0.1 720 > th dose independent rect. 10 3
624 45.11 temperature 20.0 720 < th dose independent rect. 10 4
626 45.11 temperature 15.0 720 < th dose independent rect. 22 5
628 45.11 atmosphere 1015.0 1440 < th dose independent rect. 2 6
630 45.11 temperature 15.0 720 < th dose independent rect. 21 7
663 45.11 temperature 15.0 1440 > th dose independent rect. 10 18
691 45.11 precipitation 0.1 720 > th dose independent rect. 23 20
695 45.11 temperature 15.0 720 < th dose independent rect. 9 21
730 45.11 temperature 15.0 720 < th dose dependent sin 7 NA
737 45.11 temperature 15.0 4320 < th dose dependent rect. 5 1
739 45.11 humidity 60.0 43200 < th dose dependent rect. 23 1
740 45.11 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
745 45.11 temperature 20.0 720 < th dose dependent rect. 11 2
748 45.11 temperature 15.0 1440 < th dose dependent rect. 3 3
752 45.11 precipitation 0.1 720 > th dose dependent rect. 10 3
756 45.11 temperature 20.0 720 < th dose dependent rect. 10 4
794 45.12 temperature 15.0 90 > th dose independent sin 21 NA
795 45.12 temperature 15.0 90 > th dose independent sin 0 NA
796 45.12 temperature 15.0 90 > th dose independent no NA NA
798 45.12 temperature 15.0 90 < th dose independent sin 7 NA
850 45.12 temperature 15.0 90 < th dose independent no NA NA
854 45.12 temperature 15.0 1440 < th dose independent rect. 5 1
856 45.12 temperature 15.0 1440 < th dose independent rect. 9 1
859 45.12 humidity 90.0 1440 > th dose independent rect. 11 1
860 45.12 atmosphere 1015.0 1440 > th dose independent rect. 1 1
996 45.12 temperature 15.0 270 < th dose independent rect. 24 10