BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0609700 Os07g0609700|Os07g0609700
         (386 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0609700  Conserved hypothetical protein                      412   e-115

>Os07g0609700 Conserved hypothetical protein
          Length = 386

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/351 (65%), Positives = 230/351 (65%)

Query: 36  ERGRHHEGAPRPPSWLARRLSGGRTITLLIEGRRVVGAAAIEHRRCQPVRRRIDGDANRS 95
           ERGRHHEGAPRPPSWLARRLSGGRTITLLIEGRRVVGAAAIEHRRCQPVRRRIDGDANRS
Sbjct: 36  ERGRHHEGAPRPPSWLARRLSGGRTITLLIEGRRVVGAAAIEHRRCQPVRRRIDGDANRS 95

Query: 96  LEKQLPNKGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXSHPGTLLGAGAIEALGVEAHSA 155
           LEKQLPNKGTP                           SHPGTLLGAGAIEALGVEAHSA
Sbjct: 96  LEKQLPNKGTPAPLHAGALAAAAAALAAACATDAGALASHPGTLLGAGAIEALGVEAHSA 155

Query: 156 SVAPVEPAATDXXXXXXXXXXXXXXXXXXXXXXXXXELVLRVQRAPHLRREHGXXXXXXX 215
           SVAPVEPAATD                         ELVLRVQRAPHLRREHG       
Sbjct: 156 SVAPVEPAATDLAAAGAGAALPPQRRRRGRGRRHHGELVLRVQRAPHLRREHGAERVHVE 215

Query: 216 XXXXXXXXXXPPXXXXXXXXXXXXXXXXXXXXXXXPRVRGEGGDRRLEVVGAGLVNVEVX 275
                     PP                       PRVRGEGGDRRLEVVGAGLVNVEV 
Sbjct: 216 AARHAAVDEAPPGARRGAQVADAVVVGDAAEGEAVPRVRGEGGDRRLEVVGAGLVNVEVA 275

Query: 276 XXXXXXXXXXXXXXXXXXXXXXXXXXXXPHQDVLRVGAVSHKGGLKMCKYRCCKTWLACA 335
                                       PHQDVLRVGAVSHKGGLKMCKYRCCKTWLACA
Sbjct: 276 GLAPEPDEAAEAGGAEVADMAGAAAVLAPHQDVLRVGAVSHKGGLKMCKYRCCKTWLACA 335

Query: 336 LAGYGYKCQTIEARNGIIWVWLLRNSNNCILGNQIIPSLYGEPFILNRIPS 386
           LAGYGYKCQTIEARNGIIWVWLLRNSNNCILGNQIIPSLYGEPFILNRIPS
Sbjct: 336 LAGYGYKCQTIEARNGIIWVWLLRNSNNCILGNQIIPSLYGEPFILNRIPS 386



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,329,342
Number of extensions: 305804
Number of successful extensions: 675
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)