Os07g0609700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0609700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.15 | 0.211 | 11.2 | 0.199 | 0.312 | 0.806 | 0.241 | -0.287 | 0.0174 | 2.8 | 6.256 | 338 | -- | -- |
| 20.19 | 0.209 | 11.2 | 0.245 | 0.31 | 0.801 | 0.285 | -- | 0.0293 | 2.87 | 8.27 | 347 | -- | -- |
| 20.32 | 0.21 | 11.2 | 0.167 | 0.309 | 0.803 | -- | -0.467 | 0.00913 | 2.85 | 8.627 | 343 | -- | -- |
| 20.47 | 0.211 | 11.2 | 0.24 | 0.308 | 0.791 | -- | -- | 0.0291 | 2.89 | 9.06 | 349 | -- | -- |
| 21.34 | 0.215 | 11.2 | 0.229 | -- | 0.708 | -- | 0.0378 | 0.0329 | -- | 3.869 | 935 | -- | -- |
| 27.03 | 0.244 | 11.1 | 0.42 | 0.189 | -- | 0.204 | -- | 0.144 | 23.8 | -- | -- | -- | -- |
| 27.21 | 0.244 | 11.1 | 0.412 | 0.188 | -- | -- | -- | 0.144 | 23.8 | -- | -- | -- | -- |
| 21.35 | 0.215 | 11.2 | 0.221 | -- | 0.71 | -- | -- | 0.0312 | -- | 3.478 | 926 | -- | -- |
| 21.83 | 0.218 | 11.2 | -- | 0.336 | 0.904 | -- | -- | -0.0117 | 3.15 | 9.461 | 356 | -- | -- |
| 29.43 | 0.253 | 11.1 | 0.417 | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
| 31.69 | 0.263 | 11.1 | -- | 0.193 | -- | -- | -- | 0.0977 | 23.9 | -- | -- | -- | -- |
| 22.32 | 0.22 | 11.2 | -- | -- | 0.697 | -- | -- | -0.0137 | -- | 13.26 | 2376 | -- | -- |
| 34.03 | 0.272 | 11.1 | -- | -- | -- | -- | -- | 0.0996 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 6 | 20.20 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 10 | 20.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 13 | 20.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 17 | 20.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 18 | 20.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 45 | 20.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 61 | 20.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 80 | 20.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 112 | 20.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 124 | 20.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 126 | 20.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 138 | 20.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 151 | 20.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 162 | 20.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 198 | 20.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 313 | 20.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 335 | 20.65 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 513 | 20.71 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 525 | 20.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 610 | 20.75 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 611 | 20.75 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 766 | 20.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |