BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0608100 Os07g0608100|AK068225
         (245 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0608100  Conserved hypothetical protein                      399   e-111

>Os07g0608100 Conserved hypothetical protein
          Length = 245

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/219 (90%), Positives = 198/219 (90%)

Query: 27  KTPFLPTSPIRVPTXXXXXXXXXXXXXXXXXXXXXLLEGPVLVWAGRLCLYYALLHIGLA 86
           KTPFLPTSPIRVPT                     LLEGPVLVWAGRLCLYYALLHIGLA
Sbjct: 27  KTPFLPTSPIRVPTPRRRPAAFSSAAAAVVPIAASLLEGPVLVWAGRLCLYYALLHIGLA 86

Query: 87  GSPRNPFLAHEIGDDGAGDSDLGFSKWADKLRGGAPGENEAQDKRKLVSKWKPTTKGTLK 146
           GSPRNPFLAHEIGDDGAGDSDLGFSKWADKLRGGAPGENEAQDKRKLVSKWKPTTKGTLK
Sbjct: 87  GSPRNPFLAHEIGDDGAGDSDLGFSKWADKLRGGAPGENEAQDKRKLVSKWKPTTKGTLK 146

Query: 147 RTYRVRSVEEGRRILKEIALVLSEDDHFVDASSHKGCQIRRESAHGESVCCYNVRALFDE 206
           RTYRVRSVEEGRRILKEIALVLSEDDHFVDASSHKGCQIRRESAHGESVCCYNVRALFDE
Sbjct: 147 RTYRVRSVEEGRRILKEIALVLSEDDHFVDASSHKGCQIRRESAHGESVCCYNVRALFDE 206

Query: 207 LPTPHLVLEITAFPAGPLTDNDYRKAERLEMVLRMSASI 245
           LPTPHLVLEITAFPAGPLTDNDYRKAERLEMVLRMSASI
Sbjct: 207 LPTPHLVLEITAFPAGPLTDNDYRKAERLEMVLRMSASI 245



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,840,145
Number of extensions: 346369
Number of successful extensions: 898
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 147
Effective length of database: 11,918,829
Effective search space: 1752067863
Effective search space used: 1752067863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)