BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0587200 Os07g0587200|AK108192
         (305 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0587200  Conserved hypothetical protein                      303   9e-83

>Os07g0587200 Conserved hypothetical protein
          Length = 305

 Score =  303 bits (777), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 173/305 (56%), Positives = 173/305 (56%)

Query: 1   MRARFAHDHDLMYTIVDHYLQNHRGKLTEEEKSRVCYNVNCTKLSHHLFMHLVQNPRLPL 60
           MRARFAHDHDLMYTIVDHYLQNHRGKLTEEEKSRVCYNVNCTKLSHHLFMHLVQNPRLPL
Sbjct: 1   MRARFAHDHDLMYTIVDHYLQNHRGKLTEEEKSRVCYNVNCTKLSHHLFMHLVQNPRLPL 60

Query: 61  RFVVQAMLVEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RFVVQAMLVEQ                                                 
Sbjct: 61  RFVVQAMLVEQLHSHHSMLLSGGHHHHAGAAGAPSSAAPPASLLKSSLSGAFGACGGFAA 120

Query: 121 XXXXXXXXXXXMTLGDILQRDAVLRQSAHIRASMQATTQRIDSLXXXXXXXXXXXXXXXX 180
                      MTLGDILQRDAVLRQSAHIRASMQATTQRIDSL                
Sbjct: 121 TAAAAGDAASSMTLGDILQRDAVLRQSAHIRASMQATTQRIDSLERELAGLRTRLRRRHH 180

Query: 181 XXXXXXXXXXVSAGARVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSHVHXXXXXXX 240
                     VSAGARVQE                             QSHVH       
Sbjct: 181 QGHHEHQGPQVSAGARVQEPVRPETSHRRRRRAAHVRRTRRCARERERQSHVHRCAGARR 240

Query: 241 XXXXXXXXXXSPEESVHRVIRAIACVCMATAMHACMIRVVYTSIRRSDLIMLPLSLHGHM 300
                     SPEESVHRVIRAIACVCMATAMHACMIRVVYTSIRRSDLIMLPLSLHGHM
Sbjct: 241 RRRRRRADAASPEESVHRVIRAIACVCMATAMHACMIRVVYTSIRRSDLIMLPLSLHGHM 300

Query: 301 IYFRC 305
           IYFRC
Sbjct: 301 IYFRC 305



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,872,717
Number of extensions: 122950
Number of successful extensions: 384
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 156 (64.7 bits)