BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0586600 Os07g0586600|Os07g0586600
         (192 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0586600  Conserved hypothetical protein                       99   1e-21

>Os07g0586600 Conserved hypothetical protein
          Length = 192

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 62/123 (50%)

Query: 70  TVLFLXXXXXXXXXXXXXXXXXXXATPXXXXXXXXXXXXXGDKLAVLADYWNASGLGEAL 129
           TVLFL                   ATP             GDKLAVLADYWNASGLGEAL
Sbjct: 70  TVLFLGGGGGGGGWFGMGGRGRRRATPAEELAALALSLALGDKLAVLADYWNASGLGEAL 129

Query: 130 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFCALVCHLRGAALVDGLARTAGGRKLARI 189
                                        IAFCALVCHLRGAALVDGLARTAGGRKLARI
Sbjct: 130 GVWAAVWRRGGGRRRRGGGLRRLAALLLGIAFCALVCHLRGAALVDGLARTAGGRKLARI 189

Query: 190 FLH 192
           FLH
Sbjct: 190 FLH 192



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,011,531
Number of extensions: 30971
Number of successful extensions: 86
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 153 (63.5 bits)