Os07g0586600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0586600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.74 | 0.341 | 8.69 | -0.267 | 0.303 | 0.891 | 0.379 | 3.1 | -0.457 | 9.73 | 7.64 | 585 | -- | -- |
| 55.64 | 0.347 | 8.76 | -0.747 | 0.332 | 0.836 | -0.0742 | -- | -0.593 | 8.82 | 22.06 | 510 | -- | -- |
| 53.18 | 0.34 | 8.7 | -0.291 | 0.296 | 0.89 | -- | 2.88 | -0.466 | 9.73 | 14.23 | 556 | -- | -- |
| 55.66 | 0.347 | 8.76 | -0.751 | 0.333 | 0.84 | -- | -- | -0.593 | 8.83 | 22.09 | 510 | -- | -- |
| 56.52 | 0.35 | 8.71 | -0.351 | -- | 0.766 | -- | 2.54 | -0.466 | -- | 6.128 | 244 | -- | -- |
| 69.15 | 0.39 | 8.73 | -0.561 | 0.197 | -- | 0.028 | -- | -0.455 | 13.8 | -- | -- | -- | -- |
| 69.15 | 0.389 | 8.73 | -0.56 | 0.196 | -- | -- | -- | -0.455 | 13.8 | -- | -- | -- | -- |
| 58.74 | 0.357 | 8.76 | -0.715 | -- | 0.727 | -- | -- | -0.577 | -- | 20.62 | 59 | -- | -- |
| 69.48 | 0.388 | 8.73 | -- | 0.272 | 0.67 | -- | -- | -0.473 | 9.09 | 22.73 | 472 | -- | -- |
| 71.5 | 0.395 | 8.74 | -0.568 | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
| 77.43 | 0.412 | 8.72 | -- | 0.207 | -- | -- | -- | -0.393 | 13.8 | -- | -- | -- | -- |
| 71.44 | 0.394 | 8.74 | -- | -- | 0.584 | -- | -- | -0.476 | -- | 21.7 | 18 | -- | -- |
| 80.02 | 0.418 | 8.72 | -- | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.55 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 4 | 51.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 14 | 51.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 30 | 52.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 34 | 52.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 40 | 52.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 52 | 52.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 56 | 52.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 106 | 53.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 163 | 53.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 164 | 53.23 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 191 | 53.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 192 | 53.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 220 | 53.41 | temperature | 15 | 720 | > th | dose dependent | sin | 21 | NA |
| 226 | 53.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 251 | 53.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 341 | 53.77 | temperature | 10 | 270 | > th | dose dependent | sin | 15 | NA |
| 390 | 53.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 395 | 53.90 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 402 | 53.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 409 | 53.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 423 | 53.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 462 | 54.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 465 | 54.08 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 485 | 54.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 559 | 54.29 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 607 | 54.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 680 | 54.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 695 | 54.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 733 | 54.67 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 748 | 54.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 753 | 54.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 764 | 54.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 832 | 54.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 859 | 54.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 931 | 55.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 936 | 55.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 945 | 55.03 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |