BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0585800 Os07g0585800|AK105064
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0585800 Similar to NADH-ubiquinone oxidoreductase 18 k... 325 1e-89
Os12g0157300 99 1e-21
Os03g0742001 95 3e-20
Os06g0656600 81 4e-16
>Os07g0585800 Similar to NADH-ubiquinone oxidoreductase 18 kDa subunit (EC
1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD)
(Fragment)
Length = 159
Score = 325 bits (832), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVI 60
MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVI
Sbjct: 1 MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVI 60
Query: 61 YSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKA 120
YSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKA
Sbjct: 61 YSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKA 120
Query: 121 FAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAEQA 159
FAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAEQA
Sbjct: 121 FAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAEQA 159
>Os12g0157300
Length = 239
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVI 60
M APL RS PSLG+ LLS SPAPARMLSAAASDALVEIKPGEI MVSGIP+EHLRRKV++
Sbjct: 1 MDAPLLRSFPSLGQALLSSSPAPARMLSAAASDALVEIKPGEISMVSGIPKEHLRRKVLL 60
Query: 61 YS 62
++
Sbjct: 61 WT 62
>Os03g0742001
Length = 269
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 54/62 (87%)
Query: 1 MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVI 60
M APL RSLPSLG LLS SPAPARMLS AASDALVEIKPGEI MVS IP+EHLRRKV++
Sbjct: 1 MDAPLLRSLPSLGWALLSLSPAPARMLSTAASDALVEIKPGEISMVSDIPKEHLRRKVLL 60
Query: 61 YS 62
++
Sbjct: 61 WT 62
>Os06g0656600
Length = 270
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 11 SLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVIYS 62
S+G LLS SPAPARMLS AASDALVEIKPG+I MVSGIP+EHLRRKV++++
Sbjct: 42 SVGVRLLSSSPAPARMLSVAASDALVEIKPGKISMVSGIPKEHLRRKVLLWT 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,233,149
Number of extensions: 265081
Number of successful extensions: 743
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 4
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)