BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0579000 Os07g0579000|AK107683
         (217 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0579000  Conserved hypothetical protein                      227   6e-60

>Os07g0579000 Conserved hypothetical protein
          Length = 217

 Score =  227 bits (578), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 123/217 (56%)

Query: 1   MVISLACFADWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPKLENFLDGNLFSD 60
           MVISLACFADWA                                EAPKLENFLDGNLFSD
Sbjct: 1   MVISLACFADWALRGLDYGGGSSDLSMLVGSSGGGRRTVGDGGGEAPKLENFLDGNLFSD 60

Query: 61  VHGQAASGYLYSGSTVNXXXXXXXXXXXXXTIELSMIKTWLWSNHXXXXXXXXXHADQDM 120
           VHGQAASGYLYSGSTVN             TIELSMIKTWLWSNH         HADQDM
Sbjct: 61  VHGQAASGYLYSGSTVNGAGGYSNGGCGGGTIELSMIKTWLWSNHPQPQPSPPQHADQDM 120

Query: 121 STDASASSYACSDVLVXXXXXXXXXXXXXXXXXXXXLALSMSTWXXXXXXXXXXXXXXXX 180
           STDASASSYACSDVLV                    LALSMSTW                
Sbjct: 121 STDASASSYACSDVLVGSCNGGGGGAGGTASSHGQSLALSMSTWSVASTAGGSVVVAAES 180

Query: 181 XXXXNRRVDSPGGAVPRKSIDTFGQRTSIYRAVRDFH 217
               NRRVDSPGGAVPRKSIDTFGQRTSIYRAVRDFH
Sbjct: 181 SSSENRRVDSPGGAVPRKSIDTFGQRTSIYRAVRDFH 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.129    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,965,352
Number of extensions: 80482
Number of successful extensions: 100
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)