BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0571100 Os07g0571100|AK119301
(1089 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0571100 Conserved hypothetical protein 1659 0.0
>Os07g0571100 Conserved hypothetical protein
Length = 1089
Score = 1659 bits (4296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1089 (79%), Positives = 869/1089 (79%)
Query: 1 MIGVPVPXXXXXXXXXXXXHEWSVPXXXXXXXXXXXXVAGDTSQIQRPSSRPISPASGST 60
MIGVPVP HEWSVP VAGDTSQIQRPSSRPISPASGST
Sbjct: 1 MIGVPVPRKARSASTKRSSHEWSVPGGGSSGGGGSGSVAGDTSQIQRPSSRPISPASGST 60
Query: 61 TGPARKKLKHLXXXXXXXXXXQAPKQRXXXXXXXXXXXXXXXXXXXXXXXXFIQEEIEVA 120
TGPARKKLKHL QAPKQR FIQEEIEVA
Sbjct: 61 TGPARKKLKHLGGSGSSGASGQAPKQRPSPASAPSTAPPQPPPPKISKSPSFIQEEIEVA 120
Query: 121 EVLFGLTRQFPCPSKPVESNHKLEVRDAPEXXXXXXXXXXXXXXXXXXXXXXVATIAPKR 180
EVLFGLTRQFPCPSKPVESNHKLEVRDAPE VATIAPKR
Sbjct: 121 EVLFGLTRQFPCPSKPVESNHKLEVRDAPEAKSGNSSPAPSSSVARPSDSTSVATIAPKR 180
Query: 181 KRPRLVKYDDDVRPASPAKPDLAEPSSRPETLPASRSDAKASVXXXXXXXXXXXXXXXQH 240
KRPRLVKYDDDVRPASPAKPDLAEPSSRPETLPASRSDAKASV QH
Sbjct: 181 KRPRLVKYDDDVRPASPAKPDLAEPSSRPETLPASRSDAKASVSAATDSGTTTATAGAQH 240
Query: 241 EAMREQEKREDHRSRDSELRPGESDRRDHRPESRAEPTPPAQPSGKPDGESAAVVSEARN 300
EAMREQEKREDHRSRDSELRPGESDRRDHRPESRAEPTPPAQPSGKPDGESAAVVSEARN
Sbjct: 241 EAMREQEKREDHRSRDSELRPGESDRRDHRPESRAEPTPPAQPSGKPDGESAAVVSEARN 300
Query: 301 GEATAATKIELASDGARQEKFCIDLMAPPPGKSPDRDGASDPDVDKKGLDSEMDMAARGN 360
GEATAATKIELASDGARQEKFCIDLMAPPPGKSPDRDGASDPDVDKKGLDSEMDMAARGN
Sbjct: 301 GEATAATKIELASDGARQEKFCIDLMAPPPGKSPDRDGASDPDVDKKGLDSEMDMAARGN 360
Query: 361 SEKKDAERPRRGLEINLEDDKMVQRMPADEVAPKKLTLQLDLEKPSLGDEKSPSERRPQP 420
SEKKDAERPRRGLEINLEDDKMVQRMPADEVAPKKLTLQLDLEKPSLGDEKSPSERRPQP
Sbjct: 361 SEKKDAERPRRGLEINLEDDKMVQRMPADEVAPKKLTLQLDLEKPSLGDEKSPSERRPQP 420
Query: 421 ALQQQKPKNEIKHEKSAMPAVTPPMPIPVGSWLGSFPPFGYLGPVPALSAAGLHHPMDVK 480
ALQQQKPKNEIKHEKSAMPAVTPPMPIPVGSWLGSFPPFGYLGPVPALSAAGLHHPMDVK
Sbjct: 421 ALQQQKPKNEIKHEKSAMPAVTPPMPIPVGSWLGSFPPFGYLGPVPALSAAGLHHPMDVK 480
Query: 481 PGSSAGLQHAALLPPVRPKRCATHCFIAQQIRYNQQVTAKMQNFWXXXXXXXXXXXXXXX 540
PGSSAGLQHAALLPPVRPKRCATHCFIAQQIRYNQQVTAKMQNFW
Sbjct: 481 PGSSAGLQHAALLPPVRPKRCATHCFIAQQIRYNQQVTAKMQNFWTPATAAAAAAAASRS 540
Query: 541 XXXFFGPRPFNMGVVPPAEAASLLVNPMQGSYPVRAHAPLQEAKAPSMATSPFQGSLSKD 600
FFGPRPFNMGVVPPAEAASLLVNPMQGSYPVRAHAPLQEAKAPSMATSPFQGSLSKD
Sbjct: 541 AAPFFGPRPFNMGVVPPAEAASLLVNPMQGSYPVRAHAPLQEAKAPSMATSPFQGSLSKD 600
Query: 601 KAAMNNAAVAESSQRKQPPAHEAQQPGPVPNMLQGPAFIFPFXXXXXXXXXXXXXXXSRV 660
KAAMNNAAVAESSQRKQPPAHEAQQPGPVPNMLQGPAFIFPF SRV
Sbjct: 601 KAAMNNAAVAESSQRKQPPAHEAQQPGPVPNMLQGPAFIFPFNQQQAAVVAAAANAASRV 660
Query: 661 GDAKPSVGSNTMXXXXXXXXXXXXXXXXXMNLSFANLPPADAQLFAILQNGGYPFQVAAH 720
GDAKPSVGSNTM MNLSFANLPPADAQLFAILQNGGYPFQVAAH
Sbjct: 661 GDAKPSVGSNTMPPSAAAHNSSANPGAAAMNLSFANLPPADAQLFAILQNGGYPFQVAAH 720
Query: 721 AGGPPAAYRGMAPPGPAVPFFNGHVYPSHMLHPSQQQGASPQNLQKNPMSNMSASSQKHQ 780
AGGPPAAYRGMAPPGPAVPFFNGHVYPSHMLHPSQQQGASPQNLQKNPMSNMSASSQKHQ
Sbjct: 721 AGGPPAAYRGMAPPGPAVPFFNGHVYPSHMLHPSQQQGASPQNLQKNPMSNMSASSQKHQ 780
Query: 781 PQQSQGLLXXXXXXXXXXXXXXXXXXXXXXXRPVLLPGLAHRQDSEKTVQDGPSGDDKSS 840
PQQSQGLL RPVLLPGLAHRQDSEKTVQDGPSGDDKSS
Sbjct: 781 PQQSQGLLGYAPNANAAAAASNSQSYSSGNQRPVLLPGLAHRQDSEKTVQDGPSGDDKSS 840
Query: 841 HPQKGGYDHNYAVPVHLPNFALMPPTSAAGGGGQSDKKLSDHHPHQLPPASRGQGVRIDL 900
HPQKGGYDHNYAVPVHLPNFALMPPTSAAGGGGQSDKKLSDHHPHQLPPASRGQGVRIDL
Sbjct: 841 HPQKGGYDHNYAVPVHLPNFALMPPTSAAGGGGQSDKKLSDHHPHQLPPASRGQGVRIDL 900
Query: 901 AXXXXXXXXXXXXXXXXXXXXXLDFSSLGPNHQLFQSHQEAGRHGYPQLNFATAQSVQAG 960
A LDFSSLGPNHQLFQSHQEAGRHGYPQLNFATAQSVQAG
Sbjct: 901 ASSPSFVVPFGSVGAPGSAPGGLDFSSLGPNHQLFQSHQEAGRHGYPQLNFATAQSVQAG 960
Query: 961 QHKPQRQVSGETKSVAGDSSTHNTVDSERKKSAAAKYPGDSQQHSLSFSRQDNKSYVPPF 1020
QHKPQRQVSGETKSVAGDSSTHNTVDSERKKSAAAKYPGDSQQHSLSFSRQDNKSYVPPF
Sbjct: 961 QHKPQRQVSGETKSVAGDSSTHNTVDSERKKSAAAKYPGDSQQHSLSFSRQDNKSYVPPF 1020
Query: 1021 LSGSTNDSSSRTLSLIGSEPSNAFSLGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1080
LSGSTNDSSSRTLSLIGSEPSNAFSLGGK
Sbjct: 1021 LSGSTNDSSSRTLSLIGSEPSNAFSLGGKSANTSAPAATSAAAPSPSSIPQQQQQQQQQQ 1080
Query: 1081 HFLQLHKQQ 1089
HFLQLHKQQ
Sbjct: 1081 HFLQLHKQQ 1089
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,167,388
Number of extensions: 1639591
Number of successful extensions: 6786
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6778
Number of HSP's successfully gapped: 1
Length of query: 1089
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 978
Effective length of database: 11,240,047
Effective search space: 10992765966
Effective search space used: 10992765966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 161 (66.6 bits)