Os07g0571100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0571100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.88 | 0.261 | 14 | 1.4 | 0.461 | -1.01 | -0.206 | 1.47 | 0.594 | 16.8 | 10.59 | 307 | -- | -- |
| 32.05 | 0.264 | 14 | 1.17 | 0.474 | -1 | 0.191 | -- | 0.534 | 16.9 | 12.83 | 285 | -- | -- |
| 30.89 | 0.259 | 14 | 1.4 | 0.454 | -0.999 | -- | 1.37 | 0.591 | 17.3 | 10.14 | 372 | -- | -- |
| 32.1 | 0.264 | 14 | 1.18 | 0.472 | -0.986 | -- | -- | 0.532 | 16.8 | 10.77 | 276 | -- | -- |
| 32.97 | 0.267 | 13.9 | 1.49 | -- | -0.769 | -- | 1.39 | 0.601 | -- | 6.813 | 1219 | -- | -- |
| 42.36 | 0.305 | 14 | 0.967 | 0.188 | -- | -0.0889 | -- | 0.392 | 16.6 | -- | -- | -- | -- |
| 42.37 | 0.305 | 14 | 0.966 | 0.188 | -- | -- | -- | 0.392 | 16.8 | -- | -- | -- | -- |
| 34.6 | 0.274 | 14 | 1.19 | -- | -0.753 | -- | -- | 0.523 | -- | 8.179 | 1252 | -- | -- |
| 64.92 | 0.375 | 14 | -- | 0.289 | -0.428 | -- | -- | 0.334 | 16.6 | 9.951 | 175 | -- | -- |
| 44.24 | 0.311 | 14 | 0.959 | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
| 66.99 | 0.383 | 14 | -- | 0.171 | -- | -- | -- | 0.284 | 17 | -- | -- | -- | -- |
| 67.21 | 0.382 | 14 | -- | -- | -0.261 | -- | -- | 0.318 | -- | 8.702 | 1186 | -- | -- |
| 68.53 | 0.386 | 14 | -- | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 22 |
| 6 | 29.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 11 | 29.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 39 | 30.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 52 | 30.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 56 | 30.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 70 | 30.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 72 | 30.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 76 | 30.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 90 | 30.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 136 | 30.92 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 148 | 30.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 155 | 30.97 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 229 | 31.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 18 |
| 277 | 31.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 337 | 31.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 388 | 31.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 400 | 31.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 453 | 31.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 465 | 31.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 504 | 31.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 595 | 31.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 623 | 31.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 624 | 31.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 737 | 32.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 768 | 32.05 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 784 | 32.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 797 | 32.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 16 |
| 890 | 32.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 924 | 32.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 998 | 32.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 11 |