BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0569000 Os07g0569000|AK073915
(1099 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0569000 Conserved hypothetical protein 2087 0.0
>Os07g0569000 Conserved hypothetical protein
Length = 1099
Score = 2087 bits (5407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1099 (93%), Positives = 1025/1099 (93%)
Query: 1 MEASGSEPGRPWTVSATWAPAGGAAVEDAVSFETSADDAEAVPSAVFLERPSPDGDGDAP 60
MEASGSEPGRPWTVSATWAPAGGAAVEDAVSFETSADDAEAVPSAVFLERPSPDGDGDAP
Sbjct: 1 MEASGSEPGRPWTVSATWAPAGGAAVEDAVSFETSADDAEAVPSAVFLERPSPDGDGDAP 60
Query: 61 PCEVTVHFRGKYEIHRVYVRSTARIYEIYYTTDPKDSSKDYLCTVRCGPAVKEPLPSAEE 120
PCEVTVHFRGKYEIHRVYVRSTARIYEIYYTTDPKDSSKDYLCTVRCGPAVKEPLPSAEE
Sbjct: 61 PCEVTVHFRGKYEIHRVYVRSTARIYEIYYTTDPKDSSKDYLCTVRCGPAVKEPLPSAEE 120
Query: 121 SMPQWSSDASTSEKHEHETKSVSSSIDEDSWVDVKIPELHVEKNRSKSQEPNAIGVKQET 180
SMPQWSSDASTSEKHEHETKSVSSSIDEDSWVDVKIPELHVEKNRSKSQEPNAIGVKQET
Sbjct: 121 SMPQWSSDASTSEKHEHETKSVSSSIDEDSWVDVKIPELHVEKNRSKSQEPNAIGVKQET 180
Query: 181 TLAHYEATAEITDASPCVSLTVRLLSLQSKTSVHIEEIYIFADPVEPTNDESETRPGNMG 240
TLAHYEATAEITDASPCVSLTVRLLSLQSKTSVHIEEIYIFADPVEPTNDESETRPGNMG
Sbjct: 181 TLAHYEATAEITDASPCVSLTVRLLSLQSKTSVHIEEIYIFADPVEPTNDESETRPGNMG 240
Query: 241 GSSLLAMLVPSLMQMSKSRNQKTDNKYFSDASRTQLSQGCAMAVNNSPCENVVRDAEPCS 300
GSSLLAMLVPSLMQMSKSRNQKTDNKYFSDASRTQLSQGCAMAVNNSPCENVVRDAEPCS
Sbjct: 241 GSSLLAMLVPSLMQMSKSRNQKTDNKYFSDASRTQLSQGCAMAVNNSPCENVVRDAEPCS 300
Query: 301 TDDLNFKSAGMESKLNAIDGDTITYEKGNHYELKDSKSILLPIQTTENTQAPLTKNQSVS 360
TDDLNFKSAGMESKLNAIDGDTITYEKGNHYELKDSKSILLPIQTTENTQAPLTKNQSVS
Sbjct: 301 TDDLNFKSAGMESKLNAIDGDTITYEKGNHYELKDSKSILLPIQTTENTQAPLTKNQSVS 360
Query: 361 NTDQPVTPLMDENPNPYSRIEGKLDTLLSKMEKMELYCSRFDDGMMRPICSIESRLQRLE 420
NTDQPVTPLMDENPNPYSRIEGKLDTLLSKMEKMELYCSRFDDGMMRPICSIESRLQRLE
Sbjct: 361 NTDQPVTPLMDENPNPYSRIEGKLDTLLSKMEKMELYCSRFDDGMMRPICSIESRLQRLE 420
Query: 421 QQFDVFSMEIKTLQASSARMTAPDGLSDMINPQDKTDNDGKAENSASTTNRQPGLVVRAP 480
QQFDVFSMEIKTLQASSARMTAPDGLSDMINPQDKTDNDGKAENSASTTNRQPGLVVRAP
Sbjct: 421 QQFDVFSMEIKTLQASSARMTAPDGLSDMINPQDKTDNDGKAENSASTTNRQPGLVVRAP 480
Query: 481 EFSLEESFSCDKSNENAVTLRGPSMVPRLLVKAPDFVSESEFACEKLHDGSFSPVDFALS 540
EFSLEESFSCDKSNENAVTLRGPSMVPRLLVKAPDFVSESEFACEKLHDGSFSPVDFALS
Sbjct: 481 EFSLEESFSCDKSNENAVTLRGPSMVPRLLVKAPDFVSESEFACEKLHDGSFSPVDFALS 540
Query: 541 SEKEPKTSPGLVVKVPEFPNXXXXXXXXXXXXXXXXHDDGHTKSDAALSESTVDSFKSKS 600
SEKEPKTSPGLVVKVPEFPN HDDGHTKSDAALSESTVDSFKSKS
Sbjct: 541 SEKEPKTSPGLVVKVPEFPNDSDDELEEEKETEVGDHDDGHTKSDAALSESTVDSFKSKS 600
Query: 601 HVSVDXXXXXXXXXXXXXTKKTPSSQSAACPASNSTAENTTDSSTCPFSSEQVDETSTND 660
HVSVD TKKTPSSQSAACPASNSTAENTTDSSTCPFSSEQVDETSTND
Sbjct: 601 HVSVDGALASALEALLGSTKKTPSSQSAACPASNSTAENTTDSSTCPFSSEQVDETSTND 660
Query: 661 GSAGQLSGTFVDANKVNTFISCEEADAVPQTYISKANLKAEXXXXXXXXXXXMMAFAEST 720
GSAGQLSGTFVDANKVNTFISCEEADAVPQTYISKANLKAE MMAFAEST
Sbjct: 661 GSAGQLSGTFVDANKVNTFISCEEADAVPQTYISKANLKAEVNDLNNVLDLNMMAFAEST 720
Query: 721 EPLCVPQLHTVEESKDVGSQANLKNNGSSSYMMQSIANTEHIIAPSQLPTVLESINDGQQ 780
EPLCVPQLHTVEESKDVGSQANLKNNGSSSYMMQSIANTEHIIAPSQLPTVLESINDGQQ
Sbjct: 721 EPLCVPQLHTVEESKDVGSQANLKNNGSSSYMMQSIANTEHIIAPSQLPTVLESINDGQQ 780
Query: 781 LNGNRSTLSLAEFLVARNANFSKNVISEALSSNGGAEMHTFKRTSMESAKNIKDINQLLL 840
LNGNRSTLSLAEFLVARNANFSKNVISEALSSNGGAEMHTFKRTSMESAKNIKDINQLLL
Sbjct: 781 LNGNRSTLSLAEFLVARNANFSKNVISEALSSNGGAEMHTFKRTSMESAKNIKDINQLLL 840
Query: 841 QKALEVNEDDSAKFSVSGGMNSCCLRAFTDSKKRCIESSGLEASLNDSFTKSEVEHSLSD 900
QKALEVNEDDSAKFSVSGGMNSCCLRAFTDSKKRCIESSGLEASLNDSFTKSEVEHSLSD
Sbjct: 841 QKALEVNEDDSAKFSVSGGMNSCCLRAFTDSKKRCIESSGLEASLNDSFTKSEVEHSLSD 900
Query: 901 LCSMESFSAEPAREAVGSGGVTAGNCVDDPFTGSSTVNPTAGEELQKVCDLLYEYNDDVL 960
LCSMESFSAEPAREAVGSGGVTAGNCVDDPFTGSSTVNPTAGEELQKVCDLLYEYNDDVL
Sbjct: 901 LCSMESFSAEPAREAVGSGGVTAGNCVDDPFTGSSTVNPTAGEELQKVCDLLYEYNDDVL 960
Query: 961 GMAFVAKKTSKSSPXXXXXXXXXXXXXXXXXXXXXTDNDAGXXXXXXXXXXXXXDDEAPR 1020
GMAFVAKKTSKSSP TDNDAG DDEAPR
Sbjct: 961 GMAFVAKKTSKSSPSLEVLLAESSDSEAEISDAKDTDNDAGLSSARLFSTFSSSDDEAPR 1020
Query: 1021 TDEPIIDVVDLPTPLDAYASSKNELVDDESLLDMDDPPIPPESYASVLSDMHHACLNDQS 1080
TDEPIIDVVDLPTPLDAYASSKNELVDDESLLDMDDPPIPPESYASVLSDMHHACLNDQS
Sbjct: 1021 TDEPIIDVVDLPTPLDAYASSKNELVDDESLLDMDDPPIPPESYASVLSDMHHACLNDQS 1080
Query: 1081 KPSGTFAGEGNGEYPDSLI 1099
KPSGTFAGEGNGEYPDSLI
Sbjct: 1081 KPSGTFAGEGNGEYPDSLI 1099
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.124 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,766,663
Number of extensions: 1498474
Number of successful extensions: 3590
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3581
Number of HSP's successfully gapped: 1
Length of query: 1099
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 988
Effective length of database: 11,240,047
Effective search space: 11105166436
Effective search space used: 11105166436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 161 (66.6 bits)