BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0567300 Os07g0567300|Os07g0567300
         (605 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0567300  Alpha 1,4-glycosyltransferase conserved region...  1003   0.0  
Os04g0529700  Alpha 1,4-glycosyltransferase conserved region...    86   6e-17

>Os07g0567300 Alpha 1,4-glycosyltransferase conserved region family protein
          Length = 605

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/541 (91%), Positives = 496/541 (91%)

Query: 65  EDEDDGAAVLDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEDDPIDELDVLDEDTAS 124
           EDEDDGAAVLDP                              PEDDPIDELDVLDEDTAS
Sbjct: 65  EDEDDGAAVLDPTVTITATTTTTTTTTNAAADSTTDASSVSNPEDDPIDELDVLDEDTAS 124

Query: 125 GLGAADEVPASASASSLVWDHAVGVARLPFRXXXXXXXXXXXXXXXEPAHRIAAAAFGSD 184
           GLGAADEVPASASASSLVWDHAVGVARLPFR               EPAHRIAAAAFGSD
Sbjct: 125 GLGAADEVPASASASSLVWDHAVGVARLPFRLPAAGDPLPAGLPHLEPAHRIAAAAFGSD 184

Query: 185 DEPVDLELRVEISSIAGVEDALLLKPASSAPETPLRAGWARWLEGKADYLRRDRMLRSNL 244
           DEPVDLELRVEISSIAGVEDALLLKPASSAPETPLRAGWARWLEGKADYLRRDRMLRSNL
Sbjct: 185 DEPVDLELRVEISSIAGVEDALLLKPASSAPETPLRAGWARWLEGKADYLRRDRMLRSNL 244

Query: 245 EFLNPRNHPLLQDPDSPGLTSLTRGDRMVHRMLLAEIEKAASKNFERRSLQSSDIKQGMG 304
           EFLNPRNHPLLQDPDSPGLTSLTRGDRMVHRMLLAEIEKAASKNFERRSLQSSDIKQGMG
Sbjct: 245 EFLNPRNHPLLQDPDSPGLTSLTRGDRMVHRMLLAEIEKAASKNFERRSLQSSDIKQGMG 304

Query: 305 VTEKVQQRRWGYYPGIDPHLGFNEFMEKFFEHGKCSVKVFMVWNSPQWAYGVRHQRGLES 364
           VTEKVQQRRWGYYPGIDPHLGFNEFMEKFFEHGKCSVKVFMVWNSPQWAYGVRHQRGLES
Sbjct: 305 VTEKVQQRRWGYYPGIDPHLGFNEFMEKFFEHGKCSVKVFMVWNSPQWAYGVRHQRGLES 364

Query: 365 LLRQHPEACVVMLSETLELEFFQEFVKEGYKVAVALPNLDELLEGTLTHDFVSVWNEWRK 424
           LLRQHPEACVVMLSETLELEFFQEFVKEGYKVAVALPNLDELLEGTLTHDFVSVWNEWRK
Sbjct: 365 LLRQHPEACVVMLSETLELEFFQEFVKEGYKVAVALPNLDELLEGTLTHDFVSVWNEWRK 424

Query: 425 TKYYPLHYSELVRLAALYKYGGIYLDSDVVVLKPLNALRNSIGVVKQVSENSSFSGAVLA 484
           TKYYPLHYSELVRLAALYKYGGIYLDSDVVVLKPLNALRNSIGVVKQVSENSSFSGAVLA
Sbjct: 425 TKYYPLHYSELVRLAALYKYGGIYLDSDVVVLKPLNALRNSIGVVKQVSENSSFSGAVLA 484

Query: 485 FEKNSQLPFKGWLSKPIDQEQCRKRCSNVIKLNESPFLAECLKEFHSTYDDELLQWNGAE 544
           FEKNSQLPFKGWLSKPIDQEQCRKRCSNVIKLNESPFLAECLKEFHSTYDDELLQWNGAE
Sbjct: 485 FEKNSQLPFKGWLSKPIDQEQCRKRCSNVIKLNESPFLAECLKEFHSTYDDELLQWNGAE 544

Query: 545 LMTRVIRNMSDKADDNSGHLDIKFEPSVAFYPISSTDITRSTQAALKLVLVGQALPSHIK 604
           LMTRVIRNMSDKADDNSGHLDIKFEPSVAFYPISSTDITRSTQAALKLVLVGQALPSHIK
Sbjct: 545 LMTRVIRNMSDKADDNSGHLDIKFEPSVAFYPISSTDITRSTQAALKLVLVGQALPSHIK 604

Query: 605 P 605
           P
Sbjct: 605 P 605



>Os04g0529700 Alpha 1,4-glycosyltransferase conserved region family protein
          Length = 464

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 41/254 (16%)

Query: 339 CSVKVFMVWNSPQWAYGVRHQRGLESLLRQHPEACVVMLSETLELEF----FQEFVKEGY 394
           C+ + FM W SP   +G R    +ESL R H +AC+++ S+T++ +        F+  G 
Sbjct: 174 CTRRFFMTWLSPLARFGRRELLVVESLFRSHRDACLLIASDTMDSDGGGDRLGPFLDRGL 233

Query: 395 KVAVALPNLDELLEGTLTHDFV-SVWNEWRKTKYYPL--HYSELVRLAALYKYGGIYLDS 451
           +VA A P++  LL GT    ++ +V          PL  + S L+RLA LYKYGG+YLD+
Sbjct: 234 RVAAASPDMAYLLNGTPAEAWLGAVQRGDVSPGSIPLGQNLSNLLRLALLYKYGGVYLDA 293

Query: 452 DVVVLKPLNALRNSIG---VVKQVSENSSFSGAVLAFEKNSQLPFKGWLSKPIDQEQCRK 508
           DVVVL+P + LRN+IG   V     +    + AV+ F++                     
Sbjct: 294 DVVVLRPFSDLRNAIGAQAVDASTGDWMRLNNAVMVFDRG-------------------- 333

Query: 509 RCSNVIKLNESPFLAECLKEFHSTYDDELLQWNGAELMTRVIRNMSDKADDNSGHLDIKF 568
                      P L E + EF + +D      NG  L++RV      +    +   D+  
Sbjct: 334 ----------HPLLREFIAEFAAKFDGSKWGHNGPYLVSRVAARWRRRRRPEA-EADLTV 382

Query: 569 EPSVAFYPISSTDI 582
            P  AFYP+    I
Sbjct: 383 LPPAAFYPVDWNKI 396



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,643,414
Number of extensions: 701882
Number of successful extensions: 1536
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1534
Number of HSP's successfully gapped: 2
Length of query: 605
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 498
Effective length of database: 11,448,903
Effective search space: 5701553694
Effective search space used: 5701553694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)