BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0564000 Os07g0564000|AK069806
         (408 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0564000  Conserved hypothetical protein                      796   0.0  

>Os07g0564000 Conserved hypothetical protein
          Length = 408

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/408 (95%), Positives = 390/408 (95%)

Query: 1   MEAQATHXXXXXXXXXXXXXXXXXXIAKHLANQSQVLKWLQDFSDKVEERAKGAAAEVNV 60
           MEAQATH                  IAKHLANQSQVLKWLQDFSDKVEERAKGAAAEVNV
Sbjct: 1   MEAQATHRRAGDRGGGGDGGSSSASIAKHLANQSQVLKWLQDFSDKVEERAKGAAAEVNV 60

Query: 61  LLDEAGALELDMKTAMISFNNLTRQRFIEHKISDEDSMHLKTTESMHGSLQSQVPAQDYE 120
           LLDEAGALELDMKTAMISFNNLTRQRFIEHKISDEDSMHLKTTESMHGSLQSQVPAQDYE
Sbjct: 61  LLDEAGALELDMKTAMISFNNLTRQRFIEHKISDEDSMHLKTTESMHGSLQSQVPAQDYE 120

Query: 121 RDILPRYKEALHIGLSSCKDHFRSKGRSTTSVFRAMSAYGPLPHIIGSEEYIHDNSCGLA 180
           RDILPRYKEALHIGLSSCKDHFRSKGRSTTSVFRAMSAYGPLPHIIGSEEYIHDNSCGLA
Sbjct: 121 RDILPRYKEALHIGLSSCKDHFRSKGRSTTSVFRAMSAYGPLPHIIGSEEYIHDNSCGLA 180

Query: 181 DDMQPLSDDFSWLREFQSESSDSRTADISESQIFGAQRGYEKGETDSVVSAAREFKAMLE 240
           DDMQPLSDDFSWLREFQSESSDSRTADISESQIFGAQRGYEKGETDSVVSAAREFKAMLE
Sbjct: 181 DDMQPLSDDFSWLREFQSESSDSRTADISESQIFGAQRGYEKGETDSVVSAAREFKAMLE 240

Query: 241 AALVNPYKFYDDATITAQDASVEKKISTSEDQVMLTGTSEAPSGRSAQEDNSEQTGLFAS 300
           AALVNPYKFYDDATITAQDASVEKKISTSEDQVMLTGTSEAPSGRSAQEDNSEQTGLFAS
Sbjct: 241 AALVNPYKFYDDATITAQDASVEKKISTSEDQVMLTGTSEAPSGRSAQEDNSEQTGLFAS 300

Query: 301 LQSADANPHDIYSALVREGLFDTGDEILSMDRGESADTPISGLASGLANLGTADPAERGY 360
           LQSADANPHDIYSALVREGLFDTGDEILSMDRGESADTPISGLASGLANLGTADPAERGY
Sbjct: 301 LQSADANPHDIYSALVREGLFDTGDEILSMDRGESADTPISGLASGLANLGTADPAERGY 360

Query: 361 SINETTNEEGYLIEGDDPSPSNKDEQDDQTDAHGVSSPEPEDGVSRPS 408
           SINETTNEEGYLIEGDDPSPSNKDEQDDQTDAHGVSSPEPEDGVSRPS
Sbjct: 361 SINETTNEEGYLIEGDDPSPSNKDEQDDQTDAHGVSSPEPEDGVSRPS 408



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,035,877
Number of extensions: 542469
Number of successful extensions: 1425
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1423
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)