BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0530600 Os07g0530600|AK120747
(471 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0530600 Protein of unknown function DUF299 family protein 855 0.0
>Os07g0530600 Protein of unknown function DUF299 family protein
Length = 471
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/463 (91%), Positives = 422/463 (91%)
Query: 9 PRFGSMISAKLAXXXXXXXXXXXXRLQGRRLTPPSCTPGTPAALPSPGPDKEPEREAAGS 68
PRFGSMISAKLA RLQGRRLTPPSCTPGTPAALPSPGPDKEPEREAAGS
Sbjct: 9 PRFGSMISAKLASPPPSLLLPPSPRLQGRRLTPPSCTPGTPAALPSPGPDKEPEREAAGS 68
Query: 69 GSGSATTPRSPAQLGSSQLHRWSRARAHRSGRRLEWPTIRDRGSGGAXXXXXXXXXXXXX 128
GSGSATTPRSPAQLGSSQLHRWSRARAHRSGRRLEWPTIRDRGSGGA
Sbjct: 69 GSGSATTPRSPAQLGSSQLHRWSRARAHRSGRRLEWPTIRDRGSGGASSPPTPTRPHPSS 128
Query: 129 XXXXXXXXXXXXXXXXGYGVVGRDEAAKSIYMVSDGTGWTAEHSVNAALGQFEHCLVDRG 188
GYGVVGRDEAAKSIYMVSDGTGWTAEHSVNAALGQFEHCLVDRG
Sbjct: 129 DEAASAAAKVAVEEEDGYGVVGRDEAAKSIYMVSDGTGWTAEHSVNAALGQFEHCLVDRG 188
Query: 189 CAVNTHLFNGIDDMDRLIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDILR 248
CAVNTHLFNGIDDMDRLIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDILR
Sbjct: 189 CAVNTHLFNGIDDMDRLIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDILR 248
Query: 249 PTIEAIASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHIV 308
PTIEAIASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHIV
Sbjct: 249 PTIEAIASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHIV 308
Query: 309 LVGVSRTGKTPLSIYLAQKGYKVANVPIVMGVNLPKSLFEIDQDKIFGLTINPVVLQAIR 368
LVGVSRTGKTPLSIYLAQKGYKVANVPIVMGVNLPKSLFEIDQDKIFGLTINPVVLQAIR
Sbjct: 309 LVGVSRTGKTPLSIYLAQKGYKVANVPIVMGVNLPKSLFEIDQDKIFGLTINPVVLQAIR 368
Query: 369 KARAKTLGFHGQKSNYAEMEHVRGELDHANQIFAQHPIWPVIEVTGKAIEETAAVVVRIF 428
KARAKTLGFHGQKSNYAEMEHVRGELDHANQIFAQHPIWPVIEVTGKAIEETAAVVVRIF
Sbjct: 369 KARAKTLGFHGQKSNYAEMEHVRGELDHANQIFAQHPIWPVIEVTGKAIEETAAVVVRIF 428
Query: 429 HDRKQKCAMPRISKRVAPIRIYDYLSEMVNTHVEYQKIFARDF 471
HDRKQKCAMPRISKRVAPIRIYDYLSEMVNTHVEYQKIFARDF
Sbjct: 429 HDRKQKCAMPRISKRVAPIRIYDYLSEMVNTHVEYQKIFARDF 471
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,299,151
Number of extensions: 667034
Number of successful extensions: 4042
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 367
Effective length of database: 11,605,545
Effective search space: 4259235015
Effective search space used: 4259235015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)