BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0529600 Os07g0529600|AK099918
         (355 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0529600  Similar to Thiazole biosynthetic enzyme 1-1, c...   685   0.0  

>Os07g0529600 Similar to Thiazole biosynthetic enzyme 1-1, chloroplast precursor
          Length = 355

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/355 (95%), Positives = 338/355 (95%)

Query: 1   MAAMATTASSLLKTSFAGARLPAAARNPTVSVAPRTGGAICNXXXXXXXTPPYDLNAIRF 60
           MAAMATTASSLLKTSFAGARLPAAARNPTVSVAPRTGGAICN       TPPYDLNAIRF
Sbjct: 1   MAAMATTASSLLKTSFAGARLPAAARNPTVSVAPRTGGAICNSISSSSSTPPYDLNAIRF 60

Query: 61  SPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKDPSVSVAVIEQSVS 120
           SPIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSKDPSVSVAVIEQSVS
Sbjct: 61  SPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKDPSVSVAVIEQSVS 120

Query: 121 PGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEQEDYVVIKHAALFTSTVMSRLLARPN 180
           PGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEQEDYVVIKHAALFTSTVMSRLLARPN
Sbjct: 121 PGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEQEDYVVIKHAALFTSTVMSRLLARPN 180

Query: 181 VKLFNAVAVEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMESRVVVSSCGHDGPFG 240
           VKLFNAVAVEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMESRVVVSSCGHDGPFG
Sbjct: 181 VKLFNAVAVEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMESRVVVSSCGHDGPFG 240

Query: 241 ATGVKRLQDIGMIDAVPGMRALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 300
           ATGVKRLQDIGMIDAVPGMRALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGP
Sbjct: 241 ATGVKRLQDIGMIDAVPGMRALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 300

Query: 301 TFGAMMISGQKAAHLALKALGRPNAIDGTIKKXXXXXXHPELILASKDDGEIVDA 355
           TFGAMMISGQKAAHLALKALGRPNAIDGTIKK      HPELILASKDDGEIVDA
Sbjct: 301 TFGAMMISGQKAAHLALKALGRPNAIDGTIKKAAAAAAHPELILASKDDGEIVDA 355



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,631,542
Number of extensions: 462305
Number of successful extensions: 1076
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)