Os07g0529600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thiazole biosynthetic enzyme 1-1, chloroplast precursor.
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Os07g0529600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thiazole biosynthetic enzyme 1-1, chloroplast precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 717.3 | 1.26 | 13.8 | -1.71 | 8.53 | -2.94 | 7.56 | -1.62 | -0.79 | 17.2 | 19.94 | 257 | 12 | 18 |
| 729.59 | 1.26 | 13.8 | -1.47 | 8.53 | -2.77 | 7.16 | -- | -0.761 | 17.1 | 19.9 | 245 | 12 | 18 |
| 848.94 | 1.36 | 13.7 | -1.46 | 8.67 | -2.97 | -- | -0.408 | -0.705 | 17.2 | 19.59 | 245 | 12 | 18.1 |
| 848.68 | 1.36 | 13.7 | -1.35 | 8.75 | -3.04 | -- | -- | -0.68 | 17.2 | 19.5 | 223 | 12 | 18 |
| 960.94 | 1.44 | 13.6 | -1.72 | -- | -7.66 | -- | -4.74 | -0.934 | -- | -95.76 | 1045 | 12.5 | 14 |
| 1060.89 | 1.53 | 13.8 | -2.21 | 8.68 | -- | 8.05 | -- | -1.3 | 16.1 | -- | -- | -- | -- |
| 1244.9 | 1.65 | 13.8 | -2.12 | 8.73 | -- | -- | -- | -1.25 | 16.1 | -- | -- | -- | -- |
| 1100.42 | 1.55 | 13.7 | -2.01 | -- | -7.96 | -- | -- | -1.14 | -- | -96.99 | 1032 | 12.5 | 14.2 |
| 893.83 | 1.39 | 13.7 | -- | 8.69 | -3.14 | -- | -- | -0.585 | 17.3 | 19.4 | 224 | 12 | 18 |
| 5385.87 | 3.43 | 13.8 | -2.47 | -- | -- | -- | -- | -1.48 | -- | -- | -- | -- | -- |
| 1363.11 | 1.73 | 13.8 | -- | 8.77 | -- | -- | -- | -1.02 | 16.1 | -- | -- | -- | -- |
| 1209.2 | 1.62 | 13.6 | -- | -- | -8.06 | -- | -- | -0.894 | -- | -91.77 | 1030 | 12.5 | 14.3 |
| 5546.95 | 3.48 | 13.7 | -- | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 719.99 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 18 |
| 4 | 740.34 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 22 |
| 18 | 768.15 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 19 | 768.16 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 22 | 771.40 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 33 | 775.86 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 3 |
| 39 | 777.19 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 22 |
| 43 | 779.37 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 6 |
| 54 | 783.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 55 | 783.31 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 69 | 788.68 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 9 |
| 77 | 791.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 81 | 792.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 93 | 795.75 | wind | 1 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 97 | 796.24 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 100 | 796.65 | wind | 3 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 102 | 796.93 | wind | 1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 129 | 799.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 131 | 800.72 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 133 | 800.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 135 | 801.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 138 | 801.77 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 142 | 802.39 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 147 | 802.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 7 |
| 151 | 803.24 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 15 |
| 157 | 803.51 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 169 | 804.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 183 | 805.77 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 8 |
| 197 | 806.67 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 4 |
| 207 | 808.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 215 | 808.63 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 219 | 809.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 229 | 809.44 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 235 | 809.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 242 | 810.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 249 | 810.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 258 | 810.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 276 | 811.31 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 286 | 811.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 313 | 812.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 325 | 812.82 | humidity | 90 | 30 | > th | dose dependent | sin | 3 | NA |
| 348 | 813.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 363 | 813.89 | wind | 1 | 270 | < th | dose independent | rect. | 11 | 19 |
| 394 | 814.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 400 | 814.49 | wind | 1 | 90 | < th | dose independent | sin | 5 | NA |
| 503 | 816.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 505 | 816.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 542 | 816.89 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 22 |
| 555 | 817.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 566 | 817.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 571 | 817.55 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 23 |
| 595 | 818.07 | wind | 1 | 90 | < th | dose dependent | rect. | 22 | 10 |
| 605 | 818.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 634 | 818.51 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 675 | 819.19 | wind | 1 | 90 | < th | dose dependent | rect. | 12 | 20 |
| 713 | 819.82 | wind | 1 | 90 | < th | dose dependent | sin | 5 | NA |
| 802 | 821.30 | wind | 1 | 90 | < th | dose dependent | rect. | 22 | 20 |
| 818 | 821.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 819 | 821.44 | wind | 1 | 90 | < th | dose independent | rect. | 22 | 20 |
| 830 | 821.53 | wind | 1 | 90 | < th | dose independent | rect. | 22 | 10 |
| 869 | 822.09 | wind | 1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 951 | 822.89 | wind | 1 | 90 | < th | dose independent | rect. | 22 | 13 |
| 968 | 823.04 | wind | 1 | 90 | < th | dose independent | rect. | 10 | 22 |
| 993 | 823.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |