BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0517100 Os07g0517100|AK071773
         (173 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0517100  HSP20-like chaperone domain containing protein      223   8e-59
Os01g0135800  Similar to Cytosolic class I small heat shock ...    71   4e-13

>Os07g0517100 HSP20-like chaperone domain containing protein
          Length = 173

 Score =  223 bits (567), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 119/173 (68%)

Query: 1   MDYYYXXXXXXXXXXXXXXXXXXXXWQWHHWQNLLGLLXXXXXXXXXXXXXQRCSHVSWE 60
           MDYYY                    WQWHHWQNLLGLL             QRCSHVSWE
Sbjct: 1   MDYYYPMEEEEEVHERPRFRRPVHPWQWHHWQNLLGLLSSSSPSPATAAAAQRCSHVSWE 60

Query: 61  ETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXXXXXRRSFARKFRLP 120
           ETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTEL             RRSFARKFRLP
Sbjct: 61  ETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELDDGGDGDGGGGGGRRSFARKFRLP 120

Query: 121 AMVDADGISAEYTHGVLRVTVPRLHTRARPVVNLAXXXXXXXXPACDPVARAA 173
           AMVDADGISAEYTHGVLRVTVPRLHTRARPVVNLA        PACDPVARAA
Sbjct: 121 AMVDADGISAEYTHGVLRVTVPRLHTRARPVVNLAGGGGGGGGPACDPVARAA 173



>Os01g0135800 Similar to Cytosolic class I small heat shock protein 3B (Fragment)
          Length = 150

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 57  VSWEETAAAHLYSASLPGVRKEEIRVEVEDAMYLVIRTELXXXXXXXXXXXX----XRRS 112
           V W+ET  AH+++A LPGVRK++ +VEVED   LVI  E                   RS
Sbjct: 42  VDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERS 101

Query: 113 ---FARKFRLPAMVDADGISAEYTHGVLRVTVPRLHTR 147
              F R+FRLP     D +SA   +GVL VTVP+  T+
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETK 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,970,256
Number of extensions: 105515
Number of successful extensions: 272
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 7
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)