BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0503600 Os07g0503600|Os07g0503600
         (114 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0503600  Conserved hypothetical protein                      231   6e-62
Os07g0503900  UDP-glucuronosyl/UDP-glucosyltransferase famil...   191   1e-49
Os07g0504000                                                       72   9e-14

>Os07g0503600 Conserved hypothetical protein
          Length = 114

 Score =  231 bits (590), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MAPATASPATVVLIPFCVPGHLTPMLEVGKRMLRVGFCGNADDGRGAMSPTVLLAQLPES 60
           MAPATASPATVVLIPFCVPGHLTPMLEVGKRMLRVGFCGNADDGRGAMSPTVLLAQLPES
Sbjct: 1   MAPATASPATVVLIPFCVPGHLTPMLEVGKRMLRVGFCGNADDGRGAMSPTVLLAQLPES 60

Query: 61  HRAPEIDEIIRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISRFMQQLLS 114
           HRAPEIDEIIRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISRFMQQLLS
Sbjct: 61  HRAPEIDEIIRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISRFMQQLLS 114



>Os07g0503900 UDP-glucuronosyl/UDP-glucosyltransferase family protein
          Length = 490

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/102 (92%), Positives = 95/102 (93%)

Query: 10  TVVLIPFCVPGHLTPMLEVGKRMLRVGFCGNADDGRGAMSPTVLLAQLPESHRAPEIDEI 69
           TVVLIPFCV GHLTPMLEVGKRMLR   CG+ DDGR AMS TVLLAQLPESHRAPEIDEI
Sbjct: 11  TVVLIPFCVSGHLTPMLEVGKRMLRSRCCGDDDDGRPAMSLTVLLAQLPESHRAPEIDEI 70

Query: 70  IRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISRFMQQ 111
           IRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISRFMQQ
Sbjct: 71  IRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISRFMQQ 112



>Os07g0504000 
          Length = 100

 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 40/64 (62%), Gaps = 16/64 (25%)

Query: 48  MSPTVLLAQLPESHRAPEIDEIIRREAAGASEHSGFDVRFHCLPAEELPDFRGGEDFISR 107
           MS TVLL QL  SHRA                 SGFDVRFHCLPAEEL DF G EDFISR
Sbjct: 1   MSLTVLLGQLSGSHRAD----------------SGFDVRFHCLPAEELLDFCGSEDFISR 44

Query: 108 FMQQ 111
           FMQQ
Sbjct: 45  FMQQ 48



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,578,062
Number of extensions: 195432
Number of successful extensions: 585
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 4
Length of query: 114
Length of database: 17,035,801
Length adjustment: 81
Effective length of query: 33
Effective length of database: 12,806,467
Effective search space: 422613411
Effective search space used: 422613411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)