Os07g0503600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0503600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 347.57 | 0.876 | 3.41 | -0.289 | 0.935 | -1.41 | 0.0449 | -3.26 | -0.162 | 6.68 | 20 | 370 | -- | -- |
| 353.91 | 0.876 | 3.34 | 0.227 | 0.913 | -1.03 | 1.2 | -- | 0.0193 | 6.18 | 21.87 | 664 | -- | -- |
| 347.58 | 0.868 | 3.41 | -0.29 | 0.935 | -1.41 | -- | -3.27 | -0.162 | 6.68 | 20 | 370 | -- | -- |
| 357.13 | 0.88 | 3.31 | 0.269 | 0.984 | -1.11 | -- | -- | 0.0761 | 5.93 | 21.7 | 725 | -- | -- |
| 391.57 | 0.922 | 3.42 | -0.222 | -- | -1.6 | -- | -3.36 | -0.108 | -- | 20.1 | 410 | -- | -- |
| 403.29 | 0.941 | 3.37 | -0.151 | 1.12 | -- | 1.31 | -- | -0.244 | 6.48 | -- | -- | -- | -- |
| 407.55 | 0.945 | 3.37 | -0.133 | 1.13 | -- | -- | -- | -0.248 | 6.51 | -- | -- | -- | -- |
| 402.83 | 0.935 | 3.31 | 0.346 | -- | -1.27 | -- | -- | 0.159 | -- | 21.79 | 614 | -- | -- |
| 358.83 | 0.882 | 3.31 | -- | 0.969 | -1.04 | -- | -- | 0.051 | 5.98 | 21.8 | 660 | -- | -- |
| 473.46 | 1.02 | 3.4 | -0.105 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 408.01 | 0.945 | 3.37 | -- | 1.12 | -- | -- | -- | -0.233 | 6.52 | -- | -- | -- | -- |
| 405.76 | 0.938 | 3.32 | -- | -- | -1.2 | -- | -- | 0.103 | -- | 21.76 | 614 | -- | -- |
| 473.75 | 1.02 | 3.39 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 335.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 11 | 339.05 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 17 | 340.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 30 | 342.54 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 35 | 342.83 | temperature | 15.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 43 | 343.42 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 48 | 343.88 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 50 | 343.92 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 95 | 346.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 101 | 346.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 22 |
| 130 | 347.27 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 138 | 347.46 | temperature | 20.0 | 270 | > th | dose independent | sin | 8 | NA |
| 142 | 347.56 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 162 | 347.89 | temperature | 20.0 | 270 | < th | dose independent | sin | 8 | NA |
| 195 | 348.52 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 264 | 349.99 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 11 |
| 269 | 350.06 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 282 | 350.31 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 22 |
| 290 | 350.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 18 | 11 |
| 293 | 350.56 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 328 | 350.97 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 332 | 351.05 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 18 | 14 |
| 339 | 351.05 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 437 | 351.53 | temperature | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 516 | 352.16 | temperature | 20.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 529 | 352.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 552 | 352.43 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 557 | 352.52 | temperature | 20.0 | 720 | > th | dose independent | sin | 14 | NA |
| 588 | 352.70 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 619 | 352.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 636 | 352.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 662 | 352.95 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 680 | 353.16 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 683 | 353.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 15 |
| 746 | 353.80 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 788 | 354.20 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 794 | 354.27 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 801 | 354.34 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 806 | 354.39 | temperature | 20.0 | 720 | < th | dose independent | sin | 14 | NA |
| 826 | 354.50 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 866 | 354.55 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 887 | 354.63 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 921 | 354.69 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 967 | 354.91 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 981 | 354.96 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 983 | 354.96 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 998 | 355.04 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |