BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0494700 Os07g0494700|AK064911
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0494700  Conserved hypothetical protein                      133   3e-32
Os04g0303800                                                       73   4e-14
Os03g0644466                                                       67   3e-12

>Os07g0494700 Conserved hypothetical protein
          Length = 92

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 69/92 (75%)

Query: 1  MVFSQLRRPIXXXXXXXXXXREQAWAASLVSIPSPDEMKTMIIFTTKPRXXXXXXXXXXX 60
          MVFSQLRRPI          REQAWAASLVSIPSPDEMKTMIIFTTKPR           
Sbjct: 1  MVFSQLRRPISLSTLLLTTSREQAWAASLVSIPSPDEMKTMIIFTTKPRSSLSLLRSILN 60

Query: 61 XXCRTNFLLTPSRLIHCSNGNTAVPSSCWSTL 92
            CRTNFLLTPSRLIHCSNGNTAVPSSCWSTL
Sbjct: 61 SSCRTNFLLTPSRLIHCSNGNTAVPSSCWSTL 92



>Os04g0303800 
          Length = 122

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 36/52 (69%)

Query: 38 MKTMIIFTTKPRXXXXXXXXXXXXXCRTNFLLTPSRLIHCSNGNTAVPSSCW 89
          MKTMIIF TKPR             CRTNFLLTPSRLIHCSNGNTA PSS W
Sbjct: 1  MKTMIIFITKPRSSLSLLRSILNSSCRTNFLLTPSRLIHCSNGNTAAPSSSW 52



>Os03g0644466 
          Length = 118

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 33/48 (68%)

Query: 38 MKTMIIFTTKPRXXXXXXXXXXXXXCRTNFLLTPSRLIHCSNGNTAVP 85
          MKTMIIF TKPR             CRTNFLLTPSRLIHCSNGNT VP
Sbjct: 1  MKTMIIFITKPRSSLSLLRSILNSSCRTNFLLTPSRLIHCSNGNTVVP 48



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.130    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,470,325
Number of extensions: 59561
Number of successful extensions: 117
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)