FiT-DB / Search/ Help/ Sample detail

Os07g0494700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0323) R2 : 0.417
β1 : 1.39 (0.119) R2dD : 0.182 R2D : 0.128
β2 : 1.02 (0.0819) R2dC : 0.198 R2C : 0.194
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.478 (0.0691) R2dN8 : 0.082 R2N8 : 0.0285
σ : 0.608
deviance : 168.82
__
_____
C
peak time of C : 3.75
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.37 0.58 6.1 1.47 1.05 -0.0782 -0.892 2.38 0.473 3.77 28.25 70 -- --
167.65 0.603 6.09 1.33 1.08 -0.116 0.0487 -- 0.45 3.63 37.11 217 -- --
154.14 0.578 6.08 1.48 1.06 -0.139 -- 2.5 0.498 3.57 35.84 58 -- --
164.7 0.598 6.11 1.49 1.14 -0.558 -- -- 0.518 3.47 49.84 67 -- --
176.46 0.619 6.13 1.99 -- 0.874 -- 0.905 0.465 -- 0.63 444 -- --
168.74 0.609 6.1 1.39 1.01 -- 0.182 -- 0.479 3.68 -- -- -- --
168.82 0.608 6.1 1.39 1.02 -- -- -- 0.478 3.75 -- -- -- --
165.19 0.599 6.09 1.46 -- 1.01 -- -- 0.522 -- 0.6499 482 -- --
217.86 0.687 6.13 -- 1.08 -0.46 -- -- 0.332 3.58 55.38 76 -- --
226.05 0.703 6.1 1.43 -- -- -- -- 0.505 -- -- -- -- --
219.47 0.693 6.13 -- 1.04 -- -- -- 0.323 3.73 -- -- -- --
221.01 0.692 6.12 -- -- 1.06 -- -- 0.384 -- 1.62 488 -- --
279.89 0.781 6.13 -- -- -- -- -- 0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.24 precipitation 0.1 720 < th dose independent sin 2 NA
2 148.24 precipitation 0.1 720 < th dose dependent sin 2 NA
3 148.27 temperature 25.0 720 < th dose independent rect. 20 7
5 148.67 temperature 25.0 270 < th dose independent sin 9 NA
9 149.29 temperature 25.0 270 < th dose independent rect. 21 12
11 149.32 temperature 25.0 720 < th dose independent sin 12 NA
15 149.67 precipitation 0.1 720 < th dose independent rect. 17 16
16 149.67 precipitation 0.1 720 < th dose dependent rect. 17 16
17 149.71 precipitation 0.1 720 < th dose independent rect. 3 16
18 149.71 precipitation 0.1 720 < th dose dependent rect. 3 16
32 150.19 temperature 25.0 720 < th dose independent rect. 16 16
59 150.81 precipitation 0.1 720 < th dose independent rect. 16 23
60 150.81 precipitation 0.1 720 < th dose dependent rect. 16 23
62 150.87 precipitation 0.1 720 < th dose independent rect. 18 23
63 150.87 precipitation 0.1 720 < th dose dependent rect. 18 23
64 150.90 temperature 20.0 720 < th dose independent rect. 3 2
68 150.96 radiation 40.0 30 < th dose independent sin 9 NA
81 151.24 precipitation 0.1 720 < th dose independent rect. 21 23
82 151.24 precipitation 0.1 720 < th dose dependent rect. 21 23
88 151.46 precipitation 0.1 720 < th dose independent rect. 13 17
89 151.46 precipitation 0.1 720 < th dose dependent rect. 13 17
97 151.57 radiation 30.0 90 < th dose independent rect. 5 23
99 151.62 wind 1.0 14400 < th dose independent rect. 19 11
103 151.67 radiation 30.0 90 < th dose independent rect. 15 22
114 151.77 radiation 30.0 90 < th dose independent rect. 8 19
115 151.79 precipitation 0.1 720 < th dose independent rect. 12 8
116 151.79 precipitation 0.1 720 < th dose dependent rect. 12 8
117 151.80 radiation 40.0 90 < th dose dependent rect. 15 22
120 151.84 wind 1.0 14400 > th dose independent rect. 19 11
123 151.87 radiation 1.0 90 > th dose dependent rect. 11 23
129 151.99 radiation 30.0 720 > th dose independent rect. 15 2
149 152.03 radiation 40.0 90 < th dose dependent rect. 5 23
152 152.05 radiation 30.0 90 < th dose independent rect. 8 23
159 152.14 radiation 10.0 90 > th dose dependent sin 7 NA
175 152.33 temperature 30.0 720 < th dose dependent rect. 20 9
180 152.36 temperature 30.0 720 < th dose dependent rect. 20 7
185 152.38 humidity 90.0 1440 > th dose dependent rect. 18 2
197 152.45 precipitation 0.1 720 < th dose independent sin 13 NA
198 152.45 precipitation 0.1 720 < th dose dependent sin 13 NA
204 152.47 temperature 15.0 90 > th dose dependent rect. 20 11
215 152.53 radiation 40.0 10 < th dose dependent rect. 14 23
217 152.54 radiation 30.0 10 < th dose independent rect. 14 23
219 152.56 precipitation 0.1 720 < th dose independent rect. 8 16
220 152.56 temperature 25.0 270 < th dose dependent rect. 23 10
221 152.56 precipitation 0.1 720 < th dose dependent rect. 8 16
223 152.57 radiation 40.0 10 < th dose dependent rect. 17 20
246 152.63 radiation 1.0 10 > th dose dependent rect. 13 23
257 152.70 radiation 1.0 90 > th dose dependent rect. 16 23
265 152.73 temperature 15.0 10 > th dose dependent rect. 20 11
279 152.78 radiation 30.0 30 < th dose independent rect. 17 23
284 152.80 radiation 1.0 90 > th dose dependent rect. 4 11
306 152.84 radiation 30.0 10 < th dose independent rect. 8 20
307 152.84 radiation 30.0 10 < th dose independent rect. 6 22
312 152.85 radiation 1.0 90 > th dose dependent rect. 5 13
326 152.86 radiation 1.0 90 > th dose dependent no NA NA
449 152.98 radiation 1.0 10 > th dose dependent sin 6 NA
463 153.01 atmosphere 1010.0 270 < th dose independent sin 11 NA
464 153.01 radiation 30.0 90 < th dose independent no NA NA
483 153.04 radiation 20.0 10 > th dose dependent sin 8 NA
488 153.04 radiation 1.0 10 > th dose dependent rect. 9 23
498 153.07 radiation 30.0 30 < th dose independent rect. 17 20
500 153.08 radiation 40.0 90 < th dose independent sin 20 NA
504 153.08 radiation 40.0 10 < th dose dependent rect. 17 23
505 153.09 radiation 30.0 10 > th dose independent sin 7 NA
509 153.10 radiation 30.0 10 < th dose independent rect. 8 23
513 153.11 radiation 30.0 90 < th dose independent rect. 8 16
646 153.15 radiation 30.0 90 < th dose independent rect. 1 23
657 153.18 precipitation 0.1 720 < th dose independent rect. 13 22
669 153.18 radiation 40.0 90 < th dose dependent rect. 8 19
670 153.18 radiation 40.0 90 < th dose dependent rect. 17 19
674 153.18 radiation 40.0 10 < th dose dependent rect. 6 22
675 153.18 precipitation 0.1 720 < th dose dependent rect. 13 22
681 153.19 temperature 25.0 720 < th dose dependent rect. 23 2
746 153.32 radiation 1.0 10 > th dose dependent rect. 11 23
747 153.33 radiation 30.0 30 < th dose independent rect. 21 23
748 153.33 radiation 40.0 10 < th dose dependent rect. 21 23
749 153.34 radiation 1.0 10 > th dose dependent rect. 7 23
754 153.35 radiation 10.0 90 > th dose dependent rect. 13 23
763 153.40 atmosphere 1010.0 270 < th dose independent rect. 19 11
765 153.40 radiation 1.0 10 > th dose dependent rect. 5 11
778 153.41 radiation 1.0 10 > th dose dependent rect. 7 9
779 153.41 radiation 1.0 10 > th dose dependent rect. 17 23
780 153.42 atmosphere 1010.0 720 < th dose independent rect. 19 7
781 153.42 radiation 40.0 720 < th dose independent rect. 17 16
782 153.42 humidity 50.0 720 > th dose dependent rect. 14 16
814 153.50 radiation 40.0 90 < th dose dependent no NA NA
860 153.53 radiation 40.0 90 < th dose dependent rect. 8 23
862 153.54 radiation 1.0 10 > th dose dependent no NA NA
986 153.62 temperature 20.0 90 > th dose independent sin 13 NA