BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0487300 Os07g0487300|Os07g0487300
         (138 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0488400                                                      285   6e-78
Os07g0487300                                                      285   6e-78
Os03g0398500                                                       88   2e-18
Os05g0327200                                                       85   2e-17
Os06g0592100                                                       71   2e-13
Os03g0122900                                                       65   1e-11

>Os07g0488400 
          Length = 138

 Score =  285 bits (730), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MAAMRRRGESLATTNFELHFFDFFPNPLSFPFKQQGARCYLWIWEDLLREYVEEIVAYCH 60
           MAAMRRRGESLATTNFELHFFDFFPNPLSFPFKQQGARCYLWIWEDLLREYVEEIVAYCH
Sbjct: 1   MAAMRRRGESLATTNFELHFFDFFPNPLSFPFKQQGARCYLWIWEDLLREYVEEIVAYCH 60

Query: 61  AGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDELNQSKREVAEMKHKM 120
           AGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDELNQSKREVAEMKHKM
Sbjct: 61  AGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDELNQSKREVAEMKHKM 120

Query: 121 ESEKAMLQWVLFSLSKCE 138
           ESEKAMLQWVLFSLSKCE
Sbjct: 121 ESEKAMLQWVLFSLSKCE 138



>Os07g0487300 
          Length = 138

 Score =  285 bits (730), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MAAMRRRGESLATTNFELHFFDFFPNPLSFPFKQQGARCYLWIWEDLLREYVEEIVAYCH 60
           MAAMRRRGESLATTNFELHFFDFFPNPLSFPFKQQGARCYLWIWEDLLREYVEEIVAYCH
Sbjct: 1   MAAMRRRGESLATTNFELHFFDFFPNPLSFPFKQQGARCYLWIWEDLLREYVEEIVAYCH 60

Query: 61  AGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDELNQSKREVAEMKHKM 120
           AGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDELNQSKREVAEMKHKM
Sbjct: 61  AGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDELNQSKREVAEMKHKM 120

Query: 121 ESEKAMLQWVLFSLSKCE 138
           ESEKAMLQWVLFSLSKCE
Sbjct: 121 ESEKAMLQWVLFSLSKCE 138



>Os03g0398500 
          Length = 189

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 57/83 (68%)

Query: 39  CYLWIWEDLLREYVEEIVAYCHAGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQ 98
           C+LWIWEDLL EY EE+VAYCHAGE+D + ET D LR  L D +    ++C +L+AKE +
Sbjct: 55  CFLWIWEDLLNEYAEEMVAYCHAGEYDHMQETIDILRQYLDDEKNEKAKICEVLDAKENE 114

Query: 99  LQLYRDELNQSKREVAEMKHKME 121
           L+   + LNQ + E   MK ++E
Sbjct: 115 LKSTIETLNQCRLECLAMKKQLE 137



>Os05g0327200 
          Length = 214

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%)

Query: 39  CYLWIWEDLLREYVEEIVAYCHAGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQ 98
           C+LWIWEDLL EY EE+VAYCHA E+D + ET D LR  L D +    ++C +L+AKE +
Sbjct: 55  CFLWIWEDLLNEYAEEMVAYCHASEYDHMQETTDILRQYLDDEKNEKAKICEVLDAKENE 114

Query: 99  LQLYRDELNQSKREVAEMKHKME 121
           L+   + LNQ + E   MK ++E
Sbjct: 115 LKSTIETLNQCRLECLAMKKQLE 137



>Os06g0592100 
          Length = 232

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query: 46  DLLREYVEEIVAYCHAGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQLQLYRDE 105
           DLL EY EE+VAYCHAGE+D + ET D LR  L D +    ++C +L+AKE +L+   + 
Sbjct: 137 DLLNEYAEEMVAYCHAGEYDHMQETIDILRQYLDDEKNEKAKICEVLDAKENELKSTIET 196

Query: 106 LNQSKREVAEMKHKME 121
           LNQ + E   MK ++E
Sbjct: 197 LNQCRLECLAMKKQLE 212



>Os03g0122900 
          Length = 210

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 39  CYLWIWEDLLREYVEEIVAYCHAGEFDSLWETCDELRWQLLDVQGRNIELCSILEAKEAQ 98
           C LWIWEDLL EYVEE+VAY HAGE D L +   +L  +  + + R   +  ++EA   Q
Sbjct: 108 CSLWIWEDLLNEYVEEMVAYSHAGEDDGLRDMLRQLAEEHKEERSR---MQGLVEANHRQ 164

Query: 99  LQLYRDELNQSKREVAEMKHKMESEK 124
           +Q    +LN SK++  ++K  ++ EK
Sbjct: 165 MQSIYQQLNDSKKKCEQLKKMLKEEK 190



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,829,196
Number of extensions: 189964
Number of successful extensions: 1072
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 7
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)