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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0487300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0417) R2 : 0.131
β1 : -0.0376 (0.153) R2dD : 0.000116 R2D : -0.000728
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.68 (0.378) R2dE : 0.102 R2E : 0.0582
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.89 (1.17) R2dD*E : 0.0711 R2D*E : 0.0276
γ1 : -0.0636 (0.0891) R2dN8 : 0.00131 R2N8 : 0.000361
σ : 0.781
deviance : 281.01
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 6
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3
open length of G : 1.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.08 0.786 2.95 -0.0395 0.00259 2.68 0.635 -7.28 -0.0621 5.8 1005 7 3 1.13
300.37 0.807 2.95 -0.102 0.000729 2.01 -0.323 -- -0.0804 4.06 1005 6 2.97 1.12
281 0.781 2.95 -0.0379 0.00873 2.67 -- -6.9 -0.0636 5.38 1005 6 3 1.12
299.55 0.806 2.94 -0.0524 0.00416 1.8 -- -- -0.0582 3.65 1004 6 2.98 1.1
281.01 0.781 2.95 -0.0376 -- 2.68 -- -6.89 -0.0636 -- 1005 6 3 1.12
320.63 0.839 2.94 -0.0313 0.204 -- -0.188 -- -0.0537 3.05 -- -- -- --
320.75 0.839 2.94 -0.0273 0.204 -- -- -- -0.0526 3.21 -- -- -- --
299.55 0.806 2.94 -0.0488 -- 1.78 -- -- -0.0597 -- 1004 6 2.97 1.1
299.59 0.806 2.94 -- 0.0203 1.77 -- -- -0.0526 2.25 1004 6 2.97 1.11
323.11 0.84 2.94 -0.0186 -- -- -- -- -0.0473 -- -- -- -- --
320.77 0.838 2.94 -- 0.203 -- -- -- -0.0496 3.21 -- -- -- --
299.59 0.806 2.94 -- -- 1.72 -- -- -0.0625 -- 1004 5 2.97 1.12
323.12 0.839 2.94 -- -- -- -- -- -0.0452 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.03 atmosphere 1005.0 10 > th dose dependent rect. 3 1
2 283.46 humidity 90.0 30 < th dose independent rect. 3 1
3 283.55 humidity 90.0 90 < th dose dependent rect. 2 2
7 283.68 humidity 80.0 90 < th dose independent rect. 2 3
55 294.73 atmosphere 1000.0 10 > th dose independent rect. 4 22
57 295.77 atmosphere 1000.0 10 < th dose independent rect. 7 1
64 295.77 atmosphere 1000.0 10 < th dose dependent rect. 7 1
81 296.21 atmosphere 1005.0 30 > th dose independent rect. 2 2
100 299.79 atmosphere 1000.0 90 < th dose independent rect. 22 16
112 300.75 temperature 20.0 10 < th dose dependent rect. 3 1
117 301.31 atmosphere 995.0 10 > th dose dependent rect. 4 22
124 301.60 wind 3.0 30 < th dose independent rect. 2 2
138 302.18 atmosphere 1000.0 10 < th dose independent rect. 23 10
149 302.50 atmosphere 1000.0 90 < th dose independent rect. 19 19
150 302.52 wind 1.0 30 > th dose independent rect. 2 2
174 303.19 atmosphere 1000.0 90 < th dose independent rect. 22 3
175 303.19 atmosphere 1000.0 10 < th dose dependent rect. 23 16
179 303.27 atmosphere 1000.0 1440 > th dose independent rect. 22 1
180 303.29 precipitation 0.1 10 < th dose independent rect. 2 2
181 303.29 precipitation 0.1 10 < th dose dependent rect. 2 2
185 303.42 humidity 80.0 10 > th dose independent rect. 2 2
193 303.69 wind 9.0 30 < th dose dependent rect. 2 2
206 303.76 temperature 30.0 10 < th dose dependent rect. 2 2
216 303.91 temperature 10.0 10 > th dose independent rect. 2 2
218 303.91 temperature 30.0 10 < th dose independent rect. 2 2
219 303.91 humidity 50.0 10 > th dose independent rect. 2 2
222 303.91 atmosphere 995.0 10 > th dose independent rect. 2 2
223 303.91 atmosphere 1010.0 10 < th dose independent rect. 2 2
225 303.91 radiation 1.0 10 < th dose independent rect. 2 2
230 303.91 temperature 10.0 10 > th dose independent rect. 4 22
231 303.91 radiation 1.0 10 < th dose dependent rect. 2 2
236 303.92 atmosphere 1000.0 1440 < th dose independent rect. 23 1
251 304.00 temperature 20.0 90 < th dose independent rect. 2 2
262 304.09 humidity 50.0 30 > th dose independent rect. 4 22
282 304.27 precipitation 0.1 10 < th dose independent rect. 4 22
283 304.27 precipitation 0.1 10 < th dose dependent rect. 4 22
290 304.38 atmosphere 1000.0 90 < th dose independent rect. 22 5
322 304.52 atmosphere 1000.0 10 < th dose dependent rect. 20 19
326 304.61 atmosphere 1000.0 10 < th dose independent rect. 23 1
385 305.01 atmosphere 1000.0 30 > th dose independent rect. 4 11
389 305.05 wind 9.0 10 < th dose independent rect. 4 22
440 305.46 wind 7.0 30 > th dose dependent rect. 1 9
445 305.48 atmosphere 1015.0 30 < th dose dependent rect. 6 22
453 305.53 wind 7.0 30 > th dose independent rect. 1 10
460 305.56 wind 7.0 10 > th dose independent rect. 20 15
470 305.60 humidity 50.0 10 > th dose dependent rect. 2 2
476 305.62 temperature 15.0 30 > th dose dependent rect. 6 22
485 305.66 wind 7.0 90 > th dose dependent rect. 9 1
498 305.71 atmosphere 1000.0 90 < th dose independent rect. 19 13
514 305.75 wind 7.0 30 > th dose independent rect. 7 4
521 305.76 wind 7.0 30 > th dose dependent rect. 7 3
525 305.78 wind 7.0 10 > th dose independent rect. 9 2
539 305.79 temperature 10.0 10 > th dose dependent rect. 2 2
543 305.83 atmosphere 1000.0 90 < th dose independent rect. 10 22
545 305.84 atmosphere 1000.0 90 < th dose dependent rect. 6 8
546 305.84 wind 7.0 10 > th dose dependent rect. 20 15
548 305.85 wind 3.0 30 < th dose dependent rect. 22 6
589 305.97 atmosphere 1000.0 90 < th dose independent rect. 6 22
636 306.11 temperature 20.0 10 > th dose dependent rect. 2 2
662 306.21 atmosphere 1000.0 270 > th dose independent rect. 1 23
663 306.21 temperature 20.0 10 < th dose dependent rect. 3 6
668 306.23 atmosphere 1000.0 30 > th dose independent rect. 4 9
672 306.24 atmosphere 1000.0 90 < th dose independent sin 9 NA
677 306.27 atmosphere 1000.0 90 > th dose independent sin 9 NA
681 306.29 atmosphere 1005.0 10 < th dose dependent rect. 23 10
737 306.52 temperature 30.0 4320 > th dose dependent rect. 10 2
763 306.59 humidity 60.0 10 < th dose independent rect. 10 1
766 306.59 humidity 60.0 10 < th dose dependent rect. 10 1
795 306.63 atmosphere 1000.0 10 > th dose independent sin 8 NA
813 306.73 atmosphere 1000.0 10 < th dose independent rect. 20 13
860 306.83 temperature 30.0 4320 < th dose independent rect. 3 8
883 306.90 temperature 30.0 4320 > th dose independent rect. 8 3
939 306.95 temperature 30.0 4320 < th dose independent rect. 23 12
940 306.95 temperature 30.0 4320 < th dose independent rect. 20 15
952 306.97 temperature 30.0 4320 < th dose independent rect. 9 2