BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0477500 Os07g0477500|AK066181
         (794 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0477500  Conserved hypothetical protein                     1424   0.0  

>Os07g0477500 Conserved hypothetical protein
          Length = 794

 Score = 1424 bits (3687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/794 (89%), Positives = 714/794 (89%)

Query: 1   MSGAPKRSHEEGSHSTPAKRXXXXXXXXXXXXGKIIQPGSSDFHGSFEHDGRFAKVQRIE 60
           MSGAPKRSHEEGSHSTPAKR            GKIIQPGSSDFHGSFEHDGRFAKVQRIE
Sbjct: 1   MSGAPKRSHEEGSHSTPAKRPLDDSSLYSSPSGKIIQPGSSDFHGSFEHDGRFAKVQRIE 60

Query: 61  PRDDKRPSLAHRMPIGPSNFVDHSISSDGRLESKQNKDPWDTKVDVREAKADTRDVYSDP 120
           PRDDKRPSLAHRMPIGPSNFVDHSISSDGRLESKQNKDPWDTKVDVREAKADTRDVYSDP
Sbjct: 61  PRDDKRPSLAHRMPIGPSNFVDHSISSDGRLESKQNKDPWDTKVDVREAKADTRDVYSDP 120

Query: 121 RVEFPSNKVETDVKTXXXXXXXXXXXXXXXHADYKGDAKLDKDGHPTAISNIAWKDNKEH 180
           RVEFPSNKVETDVKT               HADYKGDAKLDKDGHPTAISNIAWKDNKEH
Sbjct: 121 RVEFPSNKVETDVKTDNRADDNDIRADRRIHADYKGDAKLDKDGHPTAISNIAWKDNKEH 180

Query: 181 RGKRNIEQPSDNADWRFPRPGLQGTDESSKGPVPADERSKDAHESTGENKTEPKTXXXXX 240
           RGKRNIEQPSDNADWRFPRPGLQGTDESSKGPVPADERSKDAHESTGENKTEPKT     
Sbjct: 181 RGKRNIEQPSDNADWRFPRPGLQGTDESSKGPVPADERSKDAHESTGENKTEPKTEDKFR 240

Query: 241 XXXXXXXXXXXXXXGTXXXXXXXXXIGIQLGGNSVERRENQREDRDAEKWDRERKDSQKD 300
                         GT         IGIQLGGNSVERRENQREDRDAEKWDRERKDSQKD
Sbjct: 241 DKDRKKKDEKHRDFGTRDNDRNDRRIGIQLGGNSVERRENQREDRDAEKWDRERKDSQKD 300

Query: 301 KEGNDREKDSAKESSVATEKENAILEKTASDGAVKSAEHENKTVEQKTLKDDAWKSHXXX 360
           KEGNDREKDSAKESSVATEKENAILEKTASDGAVKSAEHENKTVEQKTLKDDAWKSH   
Sbjct: 301 KEGNDREKDSAKESSVATEKENAILEKTASDGAVKSAEHENKTVEQKTLKDDAWKSHDRD 360

Query: 361 XXXXXXXXXXXAGERHDQRSKYNDKESDDTCPEGDIEKDKEALGSVQRKRMARSRGGSQA 420
                      AGERHDQRSKYNDKESDDTCPEGDIEKDKEALGSVQRKRMARSRGGSQA
Sbjct: 361 PKDKKREKDMDAGERHDQRSKYNDKESDDTCPEGDIEKDKEALGSVQRKRMARSRGGSQA 420

Query: 421 SQREPRFRSRMRDGEGSQGKSEASAIVYKAGECMQELLKSWKEFEATPEAKSAESVQNGP 480
           SQREPRFRSRMRDGEGSQGKSEASAIVYKAGECMQELLKSWKEFEATPEAKSAESVQNGP
Sbjct: 421 SQREPRFRSRMRDGEGSQGKSEASAIVYKAGECMQELLKSWKEFEATPEAKSAESVQNGP 480

Query: 481 TLEIRIPAEFVTSTNRQVKGAQLWGTDIYTNDSDLVAVLMHTGYCSPTSSPPPSAIQELR 540
           TLEIRIPAEFVTSTNRQVKGAQLWGTDIYTNDSDLVAVLMHTGYCSPTSSPPPSAIQELR
Sbjct: 481 TLEIRIPAEFVTSTNRQVKGAQLWGTDIYTNDSDLVAVLMHTGYCSPTSSPPPSAIQELR 540

Query: 541 ATVRVLPPQDSYTSTLRNNVRSRAWGAGIGCSFRIERCCIVKKGGGTIDLEPRLSHTSAV 600
           ATVRVLPPQDSYTSTLRNNVRSRAWGAGIGCSFRIERCCIVKKGGGTIDLEPRLSHTSAV
Sbjct: 541 ATVRVLPPQDSYTSTLRNNVRSRAWGAGIGCSFRIERCCIVKKGGGTIDLEPRLSHTSAV 600

Query: 601 EPTLAPVAVERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWLKYSISIVADKGLKKSL 660
           EPTLAPVAVERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWLKYSISIVADKGLKKSL
Sbjct: 601 EPTLAPVAVERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWLKYSISIVADKGLKKSL 660

Query: 661 YTSARLKKGEVIYLETHYNRYELCFSGEKARLVGSSSNAADAETEKXXXXXXXXXXXGDR 720
           YTSARLKKGEVIYLETHYNRYELCFSGEKARLVGSSSNAADAETEK           GDR
Sbjct: 661 YTSARLKKGEVIYLETHYNRYELCFSGEKARLVGSSSNAADAETEKHQNSSHHHSQNGDR 720

Query: 721 ASSEHELRDLFRWSRCKKAMPESSMRSIGIPLPADQLEVLQDNLEWEDVQWSQTGVWVAG 780
           ASSEHELRDLFRWSRCKKAMPESSMRSIGIPLPADQLEVLQDNLEWEDVQWSQTGVWVAG
Sbjct: 721 ASSEHELRDLFRWSRCKKAMPESSMRSIGIPLPADQLEVLQDNLEWEDVQWSQTGVWVAG 780

Query: 781 KEYPLARVHFLSSN 794
           KEYPLARVHFLSSN
Sbjct: 781 KEYPLARVHFLSSN 794



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,300,043
Number of extensions: 1087263
Number of successful extensions: 3910
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3908
Number of HSP's successfully gapped: 1
Length of query: 794
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 685
Effective length of database: 11,344,475
Effective search space: 7770965375
Effective search space used: 7770965375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 160 (66.2 bits)