BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0457300 Os07g0457300|AK073856
         (637 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0457300  Protein of unknown function DUF1446 family pro...  1318   0.0  

>Os07g0457300 Protein of unknown function DUF1446 family protein
          Length = 637

 Score = 1318 bits (3411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/637 (100%), Positives = 637/637 (100%)

Query: 1   MEELHDCVVQLRSNPQRCRDTVYVGCGAGFGGDRPMAALKLLERVKELNYLVLECLAERT 60
           MEELHDCVVQLRSNPQRCRDTVYVGCGAGFGGDRPMAALKLLERVKELNYLVLECLAERT
Sbjct: 1   MEELHDCVVQLRSNPQRCRDTVYVGCGAGFGGDRPMAALKLLERVKELNYLVLECLAERT 60

Query: 61  LVDRYQIMMSGGKGYDPRVKEWLSVLLPLALDRGVCIITNMGAVDPLGAQEEVLELASNL 120
           LVDRYQIMMSGGKGYDPRVKEWLSVLLPLALDRGVCIITNMGAVDPLGAQEEVLELASNL
Sbjct: 61  LVDRYQIMMSGGKGYDPRVKEWLSVLLPLALDRGVCIITNMGAVDPLGAQEEVLELASNL 120

Query: 121 GLEITVAVAYETSSGNSVFSNESTGVRQGGSTYLGVASIVHCLENGKPQVVITSRVADAA 180
           GLEITVAVAYETSSGNSVFSNESTGVRQGGSTYLGVASIVHCLENGKPQVVITSRVADAA
Sbjct: 121 GLEITVAVAYETSSGNSVFSNESTGVRQGGSTYLGVASIVHCLENGKPQVVITSRVADAA 180

Query: 181 LFLAPMVYELGWNWNDFEELSQGTLASHLLECGCQLTGGYFMHPGDAYRDFSFEQLLDLS 240
           LFLAPMVYELGWNWNDFEELSQGTLASHLLECGCQLTGGYFMHPGDAYRDFSFEQLLDLS
Sbjct: 181 LFLAPMVYELGWNWNDFEELSQGTLASHLLECGCQLTGGYFMHPGDAYRDFSFEQLLDLS 240

Query: 241 LPYAEVSYKGEVFVGKAEGSGGLLSYSTCAEQLLYEVGDPANYITPDLVVDFRDVKFQQI 300
           LPYAEVSYKGEVFVGKAEGSGGLLSYSTCAEQLLYEVGDPANYITPDLVVDFRDVKFQQI
Sbjct: 241 LPYAEVSYKGEVFVGKAEGSGGLLSYSTCAEQLLYEVGDPANYITPDLVVDFRDVKFQQI 300

Query: 301 SKDKVQCKGAKPSNPCWPEKLLQLLPTESGWKGWGEISYGGQECLKRAHAAEYLVRSWMD 360
           SKDKVQCKGAKPSNPCWPEKLLQLLPTESGWKGWGEISYGGQECLKRAHAAEYLVRSWMD
Sbjct: 301 SKDKVQCKGAKPSNPCWPEKLLQLLPTESGWKGWGEISYGGQECLKRAHAAEYLVRSWMD 360

Query: 361 ETYPGIEGKIISYIIGYDSLKAIGDNKDSSVKQVMDVRFRMDGLFELEEHAIKFVEEFIA 420
           ETYPGIEGKIISYIIGYDSLKAIGDNKDSSVKQVMDVRFRMDGLFELEEHAIKFVEEFIA
Sbjct: 361 ETYPGIEGKIISYIIGYDSLKAIGDNKDSSVKQVMDVRFRMDGLFELEEHAIKFVEEFIA 420

Query: 421 LYTNGPAGGGGISTGQKKEITLQKILVDREKIFWQVNMKKSSIPSPQNQATNADKGQMCD 480
           LYTNGPAGGGGISTGQKKEITLQKILVDREKIFWQVNMKKSSIPSPQNQATNADKGQMCD
Sbjct: 421 LYTNGPAGGGGISTGQKKEITLQKILVDREKIFWQVNMKKSSIPSPQNQATNADKGQMCD 480

Query: 481 QQQHKCPRRCAMGTLPLNTNMDTLPSAVPSPSGTKIPLYHVAHSRAGDKGNDLNFSIIPH 540
           QQQHKCPRRCAMGTLPLNTNMDTLPSAVPSPSGTKIPLYHVAHSRAGDKGNDLNFSIIPH
Sbjct: 481 QQQHKCPRRCAMGTLPLNTNMDTLPSAVPSPSGTKIPLYHVAHSRAGDKGNDLNFSIIPH 540

Query: 541 FPDDIGRLRAVITRDWVKNAVSPLLDSSLFPADRANQVRYDPLENVSIEIYDVPGISSLN 600
           FPDDIGRLRAVITRDWVKNAVSPLLDSSLFPADRANQVRYDPLENVSIEIYDVPGISSLN
Sbjct: 541 FPDDIGRLRAVITRDWVKNAVSPLLDSSLFPADRANQVRYDPLENVSIEIYDVPGISSLN 600

Query: 601 VVVRNILDGGVNSSRRIDRHGKTLSDLILCQNVVLPP 637
           VVVRNILDGGVNSSRRIDRHGKTLSDLILCQNVVLPP
Sbjct: 601 VVVRNILDGGVNSSRRIDRHGKTLSDLILCQNVVLPP 637



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,535,708
Number of extensions: 1066091
Number of successful extensions: 2367
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2367
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 530
Effective length of database: 11,448,903
Effective search space: 6067918590
Effective search space used: 6067918590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)