BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0450000 Os07g0450000|AK121702
         (105 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0523866                                                      195   5e-51
Os07g0523500  Similar to 60S ribosomal protein L44 (60S ribo...   195   5e-51
Os07g0450000  Similar to 60S ribosomal protein L44                195   5e-51
AK069083                                                          195   5e-51
Os07g0523100  Similar to 60S ribosomal protein L44                194   1e-50
Os07g0523932                                                      194   1e-50
Os07g0523800                                                      192   3e-50
Os07g0523700  Similar to 60S ribosomal protein L44                192   4e-50
Os07g0523300  Similar to 60S ribosomal protein L44                175   5e-45
D10406                                                            154   2e-38

>Os07g0523866 
          Length = 105

 Score =  195 bits (496), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 97/105 (92%)

Query: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHX 60
           MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH 
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  XXXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                  IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105



>Os07g0523500 Similar to 60S ribosomal protein L44 (60S ribosomal protein L41)
          Length = 105

 Score =  195 bits (496), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 97/105 (92%)

Query: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHX 60
           MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH 
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  XXXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                  IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105



>Os07g0450000 Similar to 60S ribosomal protein L44
          Length = 105

 Score =  195 bits (496), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 97/105 (92%)

Query: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHX 60
           MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH 
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  XXXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                  IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105



>AK069083 
          Length = 105

 Score =  195 bits (496), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 97/105 (92%)

Query: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHX 60
           MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH 
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  XXXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                  IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105



>Os07g0523100 Similar to 60S ribosomal protein L44
          Length = 133

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/104 (92%), Positives = 96/104 (92%)

Query: 2   VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHXX 61
           VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH  
Sbjct: 30  VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89

Query: 62  XXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 90  AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 133



>Os07g0523932 
          Length = 133

 Score =  194 bits (492), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/104 (92%), Positives = 96/104 (92%)

Query: 2   VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHXX 61
           VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH  
Sbjct: 30  VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89

Query: 62  XXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 90  AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 133



>Os07g0523800 
          Length = 169

 Score =  192 bits (489), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/104 (92%), Positives = 96/104 (92%)

Query: 2   VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHXX 61
           VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH  
Sbjct: 66  VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 125

Query: 62  XXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 126 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 169



>Os07g0523700 Similar to 60S ribosomal protein L44
          Length = 137

 Score =  192 bits (489), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/104 (92%), Positives = 96/104 (92%)

Query: 2   VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHXX 61
           VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH  
Sbjct: 34  VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 93

Query: 62  XXXXXXIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
                 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 94  AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 137



>Os07g0523300 Similar to 60S ribosomal protein L44
          Length = 95

 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 87/95 (91%)

Query: 11  YCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHXXXXXXXXIVL 70
           YCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH        IVL
Sbjct: 1   YCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVL 60

Query: 71  KLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
           KLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 95



>D10406 
          Length = 127

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHX 60
           MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFH 
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  XXXXXXXIVLKLQCQSCKHYSQHPIK-RCKHFEIGGDKKGKGTSLF 105
                  IVLKLQCQSCKH    P +     FEIGGDK G     F
Sbjct: 61  KAKTTKKIVLKLQCQSCKHLLPAPXQGGASIFEIGGDKXGXXNIXF 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,608,999
Number of extensions: 116767
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 11
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)