Os07g0450000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L44.
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Os07g0450000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L44.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.72 | 0.518 | 11.5 | -0.0307 | 1.19 | 1 | 0.686 | -1.94 | -0.131 | 16.6 | 19.5 | 2588 | -- | -- |
| 125.63 | 0.522 | 11.4 | 0.211 | 1.19 | 1.53 | 0.861 | -- | -0.0644 | 16.6 | 18.74 | 2715 | -- | -- |
| 122.86 | 0.516 | 11.5 | -0.0495 | 1.19 | 0.985 | -- | -2 | -0.146 | 16.6 | 19.6 | 2602 | -- | -- |
| 127.55 | 0.526 | 11.4 | 0.202 | 1.2 | 1.56 | -- | -- | -0.0746 | 16.7 | 18.7 | 2716 | -- | -- |
| 195.37 | 0.651 | 11.4 | 0.0823 | -- | 1.1 | -- | -1.79 | -0.109 | -- | 19.4 | 1882 | -- | -- |
| 161.72 | 0.596 | 11.3 | 0.935 | 1.13 | -- | 1.04 | -- | 0.23 | 16.7 | -- | -- | -- | -- |
| 164.55 | 0.601 | 11.3 | 0.94 | 1.14 | -- | -- | -- | 0.235 | 16.8 | -- | -- | -- | -- |
| 199.99 | 0.659 | 11.4 | 0.301 | -- | 1.51 | -- | -- | -0.0705 | -- | 19.43 | 1796 | -- | -- |
| 128.22 | 0.527 | 11.4 | -- | 1.2 | 1.69 | -- | -- | -0.105 | 16.6 | 18.76 | 2725 | -- | -- |
| 233.01 | 0.713 | 11.3 | 0.897 | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
| 187.85 | 0.641 | 11.4 | -- | 1.12 | -- | -- | -- | 0.13 | 16.8 | -- | -- | -- | -- |
| 201.41 | 0.661 | 11.4 | -- | -- | 1.58 | -- | -- | -0.122 | -- | 18.8 | 3246 | -- | -- |
| 254.25 | 0.744 | 11.3 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 4 | 121.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 31 | 122.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 73 | 123.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 74 | 123.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 75 | 123.46 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 96 | 123.70 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 139 | 124.08 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 147 | 124.12 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 165 | 124.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 166 | 124.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 177 | 124.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 358 | 125.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 381 | 125.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 425 | 125.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 20 |
| 430 | 125.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 473 | 125.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 480 | 125.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 532 | 125.70 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 561 | 125.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 573 | 125.82 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 575 | 125.85 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 587 | 125.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 7 |
| 592 | 125.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 622 | 126.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 655 | 126.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 21 |
| 659 | 126.11 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 664 | 126.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 732 | 126.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 794 | 126.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 812 | 126.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 983 | 126.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 3 |