BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0418200 Os07g0418200|AK062384
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0418200 Conserved hypothetical protein 477 e-135
Os04g0165300 Conserved hypothetical protein 87 1e-17
>Os07g0418200 Conserved hypothetical protein
Length = 248
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/248 (93%), Positives = 231/248 (93%)
Query: 1 MAENMKFAEGSYVANELDMLSLASSVYTAPLFQTEFDSVYVPEYGDVGNSQDGLFPGLFI 60
MAENMKFAEGSYVANELDMLSLASSVYTAPLFQTEFDSVYVPEYGDVGNSQDGLFPGLFI
Sbjct: 1 MAENMKFAEGSYVANELDMLSLASSVYTAPLFQTEFDSVYVPEYGDVGNSQDGLFPGLFI 60
Query: 61 SDGFVFPPSEHENLPIESDLDGSXXXXXGQESSCAGNIYEGCNEPAKEVDGRSLSVSGDL 120
SDGFVFPPSEHENLPIESDLDGS GQESSCAGNIYEGCNEPAKEVDGRSLSVSGDL
Sbjct: 61 SDGFVFPPSEHENLPIESDLDGSNNNNNGQESSCAGNIYEGCNEPAKEVDGRSLSVSGDL 120
Query: 121 HSANETTIPNLEPPEIRAEQEKDNATIKCDLPCEGWLKRKSNCLSHRMKGVTTVCTIVAA 180
HSANETTIPNLEPPEIRAEQEKDNATIKCDLPCEGWLKRKSNCLSHRMKGVTTVCTIVAA
Sbjct: 121 HSANETTIPNLEPPEIRAEQEKDNATIKCDLPCEGWLKRKSNCLSHRMKGVTTVCTIVAA 180
Query: 181 GALMGFVIIGQRWQQDKLHLHHFQFNIGTEGVNRIVGIFSRCKDAXXXXXXXXXXXXTRV 240
GALMGFVIIGQRWQQDKLHLHHFQFNIGTEGVNRIVGIFSRCKDA TRV
Sbjct: 181 GALMGFVIIGQRWQQDKLHLHHFQFNIGTEGVNRIVGIFSRCKDALPSSQQLKSLLPTRV 240
Query: 241 LPQEPVSA 248
LPQEPVSA
Sbjct: 241 LPQEPVSA 248
>Os04g0165300 Conserved hypothetical protein
Length = 258
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 113/256 (44%), Gaps = 49/256 (19%)
Query: 1 MAENMKFAEGSYV---ANELDMLSLASSVYTAPLFQ--------TEFDSVYVPEYGDVGN 49
MA+N K A G + ++++L +S Y A E + + GD
Sbjct: 1 MADNDKEAAGEGATPRGADWEVVTLTASAYAAAPGPGGAGDRPAAETKGLDASQEGDQTK 60
Query: 50 SQDGLFPG------LFISDGFVFPPSEHENLPIESDLDGSXXXXXGQESSCA-------- 95
DG G LF+S FVFPPSEHENLPI++ D QE+S +
Sbjct: 61 GLDGSQEGRGSESALFMSGHFVFPPSEHENLPIDAGFDDIQHKKDAQEASTSVEDEGFKN 120
Query: 96 --GNIYEGCNEPAKEVDGRSLSVS------------GDLHSANE--------TTIPNLEP 133
GN G +GR+LS + G H+ +E + +
Sbjct: 121 VGGNYGAGLERIQFYDEGRNLSANDVEMMMGDAAEHGSFHAQDEEQGLDDDNDFDDSHDK 180
Query: 134 PEIRAEQEKDNATIKCDLPCEGWLKRKSNCLSHRMKGVTTVCTIVAAGALMGFVIIGQRW 193
++ +E D+ + PC+ WLK+ +CL H+ K + ++V A AL+G VI+G RW
Sbjct: 181 SDLPSES-ADSKSRDSGAPCKCWLKKHMSCLYHQAKETNALWSVVVAAALVGLVILG-RW 238
Query: 194 QQDKLHLHHFQFNIGT 209
+DKLHL + ++ G+
Sbjct: 239 HKDKLHLKNLKWRSGS 254
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,362,569
Number of extensions: 340809
Number of successful extensions: 659
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)