BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0264900 Os07g0264900|AK071462
         (180 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0264900  Hypothetical protein                                347   2e-96
Os10g0360900  Conserved hypothetical protein                      269   7e-73

>Os07g0264900 Hypothetical protein
          Length = 180

 Score =  347 bits (891), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/180 (93%), Positives = 169/180 (93%)

Query: 1   HFRRPKLLTESGAISEIVKSNLSDRMRSYLEAGCTHHNETIQNMNKLHSCQEKLNDHISK 60
           HFRRPKLLTESGAISEIVKSNLSDRMRSYLEAGCTHHNETIQNMNKLHSCQEKLNDHISK
Sbjct: 1   HFRRPKLLTESGAISEIVKSNLSDRMRSYLEAGCTHHNETIQNMNKLHSCQEKLNDHISK 60

Query: 61  AKXXXXXXXXXXXDVYSTTLKACLSSLRHMDDCPDDNSLTNIFSEDEQQSGDLLDKAVSC 120
           AK           DVYSTTLKACLSSLRHMDDCPDDNSLTNIFSEDEQQSGDLLDKAVSC
Sbjct: 61  AKLLLEELHILEEDVYSTTLKACLSSLRHMDDCPDDNSLTNIFSEDEQQSGDLLDKAVSC 120

Query: 121 ASVMVLVHNMLKLDYTMQEKIVKALCIKTASSELEGYCQMWDLRPYIDDNVIQLAWQFVS 180
           ASVMVLVHNMLKLDYTMQEKIVKALCIKTASSELEGYCQMWDLRPYIDDNVIQLAWQFVS
Sbjct: 121 ASVMVLVHNMLKLDYTMQEKIVKALCIKTASSELEGYCQMWDLRPYIDDNVIQLAWQFVS 180



>Os10g0360900 Conserved hypothetical protein
          Length = 270

 Score =  269 bits (688), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 145/179 (81%)

Query: 1   HFRRPKLLTESGAISEIVKSNLSDRMRSYLEAGCTHHNETIQNMNKLHSCQEKLNDHISK 60
           HF RPKLLTES AI EIVKSN SDRMRSYLEAGCTHHNE IQNMN+LH+ QEKLNDHI+K
Sbjct: 91  HFWRPKLLTESSAIIEIVKSNYSDRMRSYLEAGCTHHNEIIQNMNRLHAYQEKLNDHINK 150

Query: 61  AKXXXXXXXXXXXDVYSTTLKACLSSLRHMDDCPDDNSLTNIFSEDEQQSGDLLDKAVSC 120
           AK           DVYS  L A LSS R+ DDCPD ++LTN+ SEDEQQ  D LD AVS 
Sbjct: 151 AKLLLEELQFLEEDVYSAALTASLSSSRNTDDCPDHDNLTNVCSEDEQQPEDWLDGAVSF 210

Query: 121 ASVMVLVHNMLKLDYTMQEKIVKALCIKTASSELEGYCQMWDLRPYIDDNVIQLAWQFV 179
           ASV+VLVHNMLK+DY MQEKIVKA  +KT+SSE+EGYCQMWDLRPYIDDNV+QLAWQ V
Sbjct: 211 ASVIVLVHNMLKMDYMMQEKIVKAFWVKTSSSEIEGYCQMWDLRPYIDDNVMQLAWQLV 269



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,241,362
Number of extensions: 164709
Number of successful extensions: 388
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)