BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0247100 Os07g0247100|AK068864
         (357 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0247100  O-methyltransferase, N-terminal domain contain...   665   0.0  

>Os07g0247100 O-methyltransferase, N-terminal domain containing protein
          Length = 357

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/357 (92%), Positives = 332/357 (92%)

Query: 1   MPVLPWLAAAATTPVXXXXXXXXXXXXXXXXXXXSFPPWSNCAKSGLPPRGPFATAADTP 60
           MPVLPWLAAAATTPV                   SFPPWSNCAKSGLPPRGPFATAADTP
Sbjct: 1   MPVLPWLAAAATTPVRRSPPLPATPRALLRLPASSFPPWSNCAKSGLPPRGPFATAADTP 60

Query: 61  LGGSLXXXXXXRDTLLDGALRAARFRDEESRRPDPLFIDPYAAVLLSLDVASEDKDLLAL 120
           LGGSL      RDTLLDGALRAARFRDEESRRPDPLFIDPYAAVLLSLDVASEDKDLLAL
Sbjct: 61  LGGSLPEPEEERDTLLDGALRAARFRDEESRRPDPLFIDPYAAVLLSLDVASEDKDLLAL 120

Query: 121 HLMPSAEHYRLVTRYIDDKLQHFISNSDDLRQIVLLTDGMDTRPYRLSWPRLSVVYDVSP 180
           HLMPSAEHYRLVTRYIDDKLQHFISNSDDLRQIVLLTDGMDTRPYRLSWPRLSVVYDVSP
Sbjct: 121 HLMPSAEHYRLVTRYIDDKLQHFISNSDDLRQIVLLTDGMDTRPYRLSWPRLSVVYDVSP 180

Query: 181 RRVFITASQQLRGAGAKISRNCVVLHTSSESPDLQAGLNKNGFNGNRPSLWVLQGLPLFT 240
           RRVFITASQQLRGAGAKISRNCVVLHTSSESPDLQAGLNKNGFNGNRPSLWVLQGLPLFT
Sbjct: 181 RRVFITASQQLRGAGAKISRNCVVLHTSSESPDLQAGLNKNGFNGNRPSLWVLQGLPLFT 240

Query: 241 FKSLEDLLLVIGNLAMKGSIFIGEVPRFTQWGAATDMASEQDRLENLFFTQGFRVSFVHY 300
           FKSLEDLLLVIGNLAMKGSIFIGEVPRFTQWGAATDMASEQDRLENLFFTQGFRVSFVHY
Sbjct: 241 FKSLEDLLLVIGNLAMKGSIFIGEVPRFTQWGAATDMASEQDRLENLFFTQGFRVSFVHY 300

Query: 301 EEVAKDVGLGLDSPPEIHGRAIFIAEQLRFSDAQMESFRMHFERIEDDADEDGFEEL 357
           EEVAKDVGLGLDSPPEIHGRAIFIAEQLRFSDAQMESFRMHFERIEDDADEDGFEEL
Sbjct: 301 EEVAKDVGLGLDSPPEIHGRAIFIAEQLRFSDAQMESFRMHFERIEDDADEDGFEEL 357



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,133,810
Number of extensions: 504347
Number of successful extensions: 1004
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1003
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 255
Effective length of database: 11,709,973
Effective search space: 2986043115
Effective search space used: 2986043115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)