BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0235700 Os07g0235700|AK106981
         (180 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0235700  Conserved hypothetical protein                      238   2e-63

>Os07g0235700 Conserved hypothetical protein
          Length = 180

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 128/180 (71%)

Query: 1   MAASSPPPSLWKMXXXXXXXXXXXXXXXXXSKCHRRATTAKNIHHAPLPPAGPSTLLPSN 60
           MAASSPPPSLWKM                 SKCHRRATTAKNIHHAPLPPAGPSTLLPSN
Sbjct: 1   MAASSPPPSLWKMTTGGTAATRGGGGTADTSKCHRRATTAKNIHHAPLPPAGPSTLLPSN 60

Query: 61  SLGGRSATGMTSDPLVEAAYKMTALGSTAACVHRRLXXXXXXXXXXXXLDALCGGGFSXX 120
           SLGGRSATGMTSDPLVEAAYKMTALGSTAACVHRRL            LDALCGGGFS  
Sbjct: 61  SLGGRSATGMTSDPLVEAAYKMTALGSTAACVHRRLSSSSQASSCQCCLDALCGGGFSLR 120

Query: 121 XXXXXXXXXXKEQKGGRRLNSRRPLFPFFLSRHHREQPMFISSPRXXXXXXXXXXXPPCV 180
                     KEQKGGRRLNSRRPLFPFFLSRHHREQPMFISSPR           PPCV
Sbjct: 121 RRCLVHLHRRKEQKGGRRLNSRRPLFPFFLSRHHREQPMFISSPRVHVLLFFVLFFPPCV 180



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,505,522
Number of extensions: 177128
Number of successful extensions: 602
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)